Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.1e-243 846.3 430 100.0
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 8.4e-201 703.7 428 80.8
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 1.7e-188 662.9 434 77.4
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 5.9e-186 654.4 431 75.4
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 4.7e-183 644.8 431 74.9
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 3.0e-182 642.1 432 75.7
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 5.7e-181 637.9 430 74.7
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 1.7e-180 636.3 434 73.5
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 4.8e-180 634.8 430 74.2
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 8.2e-180 634.0 435 72.9
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.1e-179 631.7 435 72.4
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 5.3e-179 631.3 442 70.4
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 9.1e-179 630.6 430 72.6
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 1.5e-178 629.8 438 73.5
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 4.5e-178 628.2 431 72.6
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 7.7e-178 627.5 432 72.9
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.3e-177 626.7 400 75.5
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.7e-177 626.3 433 73.4
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 3.8e-177 625.2 439 71.8
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 6.5e-177 624.4 442 69.9
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 3.2e-176 622.1 435 72.0
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 4.2e-176 621.7 440 70.2
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.6e-175 619.8 404 74.5
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.6e-175 619.8 400 76.0
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 3.6e-175 618.6 432 72.5
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 6.1e-175 617.8 434 72.4
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 6.1e-175 617.8 434 70.3
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 1.0e-174 617.1 389 75.8
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 1.4e-174 616.7 404 75.0
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 1.4e-174 616.7 410 73.4
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 1.4e-174 616.7 428 72.2
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 2.3e-174 615.9 403 73.2
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 3.0e-174 615.5 436 71.8
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 3.0e-174 615.5 362 80.9
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 3.0e-174 615.5 419 72.6
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 3.0e-174 615.5 405 73.8
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 3.9e-174 615.1 432 71.5
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 5.2e-174 614.8 438 69.9
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 8.8e-174 614.0 404 73.0
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 8.8e-174 614.0 403 74.7
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 8.8e-174 614.0 440 70.0
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 8.8e-174 614.0 433 73.2
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 8.8e-174 614.0 429 71.8
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 1.1e-173 613.6 436 69.7
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 1.5e-173 613.2 432 72.2
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 1.5e-173 613.2 433 73.0
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.6e-173 612.5 437 70.9
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 2.6e-173 612.5 430 73.5
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 2.6e-173 612.5 434 71.9
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 3.3e-173 612.1 400 73.2
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 3.3e-173 612.1 434 70.3
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 3.3e-173 612.1 428 71.3
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 4.4e-173 611.7 395 75.2
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.4e-173 611.7 428 70.8
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 7.4e-173 610.9 398 76.9
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 9.7e-173 610.5 431 71.2
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 9.7e-173 610.5 397 74.8
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 9.7e-173 610.5 432 71.3
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 1.3e-172 610.1 406 73.2
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-172 610.1 436 70.6
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 2.2e-172 609.4 414 72.5
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 2.8e-172 609.0 400 73.0
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 3.7e-172 608.6 433 71.8
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 3.7e-172 608.6 400 73.0
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 3.7e-172 608.6 400 73.0
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 4.8e-172 608.2 433 71.8
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 8.2e-172 607.4 412 72.6
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 8.2e-172 607.4 406 72.7
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 8.2e-172 607.4 400 73.0
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.1e-171 607.1 412 73.3
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.1e-171 607.1 400 73.2
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 1.4e-171 606.7 429 71.1
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.4e-171 606.7 429 69.2
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 1.4e-171 606.7 425 71.3
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.8e-171 606.3 388 74.5
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 2.4e-171 605.9 439 69.9
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 3.1e-171 605.5 435 70.3
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 4.1e-171 605.1 413 73.1
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 4.1e-171 605.1 440 69.8
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.1e-171 605.1 432 70.8
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 4.1e-171 605.1 431 71.7
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 5.3e-171 604.7 405 74.8
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 7.0e-171 604.4 400 73.2
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.0e-170 602.8 408 72.5
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 3.5e-170 602.1 413 72.4
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 5.9e-170 601.3 431 70.3
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 1.3e-169 600.1 437 70.7
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.7e-169 599.7 432 70.8
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 2.9e-169 599.0 431 69.8
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 2.9e-169 599.0 417 71.7
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.9e-169 599.0 430 70.0
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 3.8e-169 598.6 426 69.7
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 3.8e-169 598.6 436 70.2
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.8e-169 598.6 431 69.4
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 5.0e-169 598.2 397 73.3
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.1e-168 597.0 433 70.2
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 1.1e-168 597.0 425 70.8
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 1.5e-168 596.7 406 71.4
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 1.9e-168 596.3 428 70.8
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 4.2e-168 595.1 425 70.8
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 5.5e-168 594.7 362 78.5
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.2e-167 593.6 412 71.4
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.6e-167 593.2 416 70.4
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 4.7e-167 591.7 362 77.3
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 6.1e-167 591.3 429 69.2
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.8e-166 589.7 362 76.5
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 2.3e-166 589.3 422 69.9
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 1.2e-165 587.0 432 69.4
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.7e-165 584.7 431 66.6
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 2.8e-164 582.4 417 70.7
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 2.8e-164 582.4 417 70.7
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 6.3e-164 581.3 360 75.8
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.8e-163 579.7 355 76.3
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 1.5e-160 570.1 425 67.5
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 6.8e-158 561.2 331 80.1
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 8.8e-158 560.8 359 74.4
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 2.0e-157 559.7 363 74.4
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 2.0e-157 559.7 333 81.1
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 2.6e-157 559.3 406 69.0
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 1.1e-155 553.9 331 80.1
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 2.4e-155 552.7 429 67.8
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 5.9e-154 548.1 331 77.9
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 8.6e-153 544.3 353 74.8
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 2.5e-152 542.7 361 72.9
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 1.0e-150 537.3 361 70.6
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 6.8e-150 534.6 333 77.5
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 2.6e-149 532.7 428 63.3
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 2.8e-148 529.3 361 68.4
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 4.9e-148 528.5 362 68.5
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 1.2e-143 513.8 362 68.0
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 1.8e-142 510.0 362 67.4
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.9e-131 473.4 432 60.0
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-124 450.7 315 71.4
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 1.1e-123 447.6 362 59.7
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 3.3e-120 436.0 362 58.0
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 6.8e-118 428.3 433 55.7
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 1.1e-112 411.0 434 53.5
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.6e-111 407.1 431 53.8
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 4.0e-110 402.5 360 55.6
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 2.4e-94 350.1 434 48.4
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 1.5e-85 320.9 256 67.2
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 7.6e-85 318.5 362 45.9
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-82 310.8 245 66.9
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 1.5e-77 294.3 179 81.0
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 1.5e-72 277.7 260 59.6
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 2.0e-72 277.3 154 86.4
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 1.4e-70 271.2 175 70.9
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 3.4e-69 266.5 175 69.1
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 1.2e-61 241.5 246 54.9
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.5e-61 240.0 252 54.0
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 3.6e-58 229.9 365 34.2
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.0e-57 228.4 190 63.2
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 5.7e-56 222.6 175 66.3
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 2.6e-53 213.8 432 33.1
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 5.9e-53 212.6 328 38.4
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 1.7e-52 211.1 163 68.1
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.6e-50 203.4 190 57.4
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-47 194.9 157 64.3
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 4.8e-47 193.0 157 63.7
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 3.1e-46 190.3 152 62.5
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 1.2e-45 188.3 157 63.1
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.6e-45 188.0 109 80.7
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 5.0e-44 183.0 152 63.2
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.4e-43 178.7 308 38.3
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 7.5e-40 169.1 147 62.6
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 3.4e-32 143.7 83 80.7
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.2e-29 135.2 78 79.5
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.5e-27 127.5 91 64.8
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 8.0e-26 122.5 144 50.7
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.3e-23 115.2 293 28.7
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.2e-23 114.4 158 41.8
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 1.1e-22 112.1 63 90.5
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.7e-20 104.8 65 87.7
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 1.9e-19 101.3 65 76.9
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.1e-17 95.5 54 79.6
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.9e-15 87.4 139 39.6
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 7.1e-14 82.8 55 74.5
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.6e-13 80.1 68 54.4
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 7.3e-11 72.8 141 38.3
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 3.1e-09 67.4 50 62.0
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 4.4e-08 63.5 61 55.7
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 2.2e-07 61.2 37 73.0
SalBow7G4792 Salvia bowleyana HOM05D001176 ORTHO05D019554 4.1e-06 57.0 30 86.7
Dinv11589 Davidia involucrata HOM05D003687 ORTHO05D004571 7.1e-06 56.2 54 51.9


User provided reference genes

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