Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 7.9e-120 433.7 208 100.0
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 9.0e-108 393.7 208 88.5
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 1.8e-103 379.4 208 85.1
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 3.0e-103 378.6 208 84.6
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 3.7e-101 371.7 208 83.2
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 9.1e-100 367.1 208 80.3
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 3.4e-99 365.2 188 93.6
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 1.4e-95 353.2 206 77.7
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 3.9e-95 351.7 208 76.0
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 6.3e-93 344.4 207 78.7
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 6.3e-93 344.4 207 78.7
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.8e-92 342.8 206 75.2
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 3.1e-92 342.0 207 74.9
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 5.3e-92 341.3 205 73.7
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.5e-91 339.7 208 74.0
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 4.5e-91 338.2 208 73.6
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 2.2e-90 335.9 206 73.3
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 2.9e-90 335.5 203 73.9
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 2.9e-90 335.5 205 72.7
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 5.0e-90 334.7 204 73.0
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 8.5e-90 334.0 204 72.5
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 2.5e-89 332.4 203 74.9
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.2e-89 332.0 204 72.1
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.2e-89 332.0 204 72.1
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.1e-88 329.3 204 71.6
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.6e-88 328.6 204 70.6
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 3.6e-88 328.6 203 71.9
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 4.7e-88 328.2 204 70.6
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 1.4e-87 326.6 204 71.6
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.8e-87 326.2 204 71.1
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.0e-87 325.5 204 70.1
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.1e-86 323.6 204 71.1
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 5.7e-86 321.2 204 70.6
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 7.4e-86 320.9 204 70.6
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 3.7e-85 318.5 205 69.3
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 6.3e-85 317.8 161 91.9
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 8.2e-85 317.4 204 69.6
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 8.2e-85 317.4 202 69.8
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.1e-84 317.0 204 71.1
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 1.4e-84 316.6 204 70.1
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 4.1e-84 315.1 208 70.7
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 4.1e-84 315.1 205 69.3
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 9.1e-84 313.9 204 69.6
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 9.1e-84 313.9 204 69.6
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 1.2e-83 313.5 204 68.6
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 3.5e-83 312.0 209 68.9
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 4.5e-83 311.6 204 68.6
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 1.7e-82 309.7 208 67.3
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 3.8e-82 308.5 205 68.3
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 8.5e-82 307.4 205 66.3
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 8.5e-82 307.4 203 68.5
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 1.1e-81 307.0 207 66.2
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 1.9e-81 306.2 205 64.4
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 3.2e-81 305.4 208 65.9
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 5.5e-81 304.7 207 65.2
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 1.6e-80 303.1 205 63.9
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 2.1e-80 302.8 207 64.7
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 2.1e-80 302.8 207 66.2
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 2.7e-80 302.4 207 64.3
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 2.7e-80 302.4 208 65.4
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 3.6e-80 302.0 205 63.9
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 3.6e-80 302.0 198 69.2
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 4.7e-80 301.6 205 64.9
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.0e-79 300.4 209 65.1
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 1.0e-79 300.4 205 63.9
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 1.8e-79 299.7 207 64.3
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 1.8e-79 299.7 207 64.3
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 6.7e-79 297.7 213 64.8
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 1.5e-78 296.6 204 64.2
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 2.0e-78 296.2 204 66.2
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 4.8e-77 291.6 204 64.7
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 4.8e-77 291.6 204 65.2
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 6.3e-77 291.2 184 71.2
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 1.1e-76 290.4 204 64.2
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 5.3e-76 288.1 202 64.9
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 1.6e-75 286.6 208 63.5
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 8.5e-74 280.8 206 64.1
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 1.5e-73 280.0 206 63.6
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 2.1e-72 276.2 164 76.2
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.1e-72 276.2 205 62.0
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 6.1e-72 274.6 183 68.3
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 8.8e-71 270.8 174 70.1
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 7.5e-70 267.7 176 67.0
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 7.0e-68 261.2 184 63.0
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 3.5e-67 258.8 161 72.0
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 4.7e-64 248.4 163 67.5
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 6.1e-64 248.1 208 54.3
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 1.5e-62 243.4 218 53.2
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 4.4e-62 241.9 213 54.0
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 4.4e-62 241.9 213 54.0
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 7.5e-62 241.1 155 71.0
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 1.4e-60 236.9 188 57.4
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 2.7e-59 232.6 161 66.5
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 5.6e-57 224.9 146 71.2
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 2.1e-56 223.0 210 52.9
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 2.3e-55 219.5 149 65.1
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 5.0e-50 201.8 146 57.5
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 2.5e-49 199.5 122 71.3
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 1.2e-48 197.2 168 56.0
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 4.7e-48 195.3 148 59.5
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 6.2e-48 194.9 215 43.3
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 3.4e-46 189.1 121 66.1
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 8.6e-42 174.5 106 70.8
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 3.3e-41 172.6 106 69.8
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 1.9e-36 156.8 162 45.7
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.5e-33 146.4 145 52.4
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 5.6e-33 145.2 156 43.6
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 4.4e-30 135.6 168 38.7
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 8.4e-29 131.3 211 35.1
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 2.7e-27 126.3 164 40.2
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 6.6e-26 121.7 191 35.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 5.8e-22 108.6 273 25.6
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 5.8e-22 108.6 103 52.4
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 9.6e-17 91.3 61 63.9
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 2.1e-16 90.1 56 67.9
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 3.2e-12 76.3 52 61.5


User provided reference genes

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