Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 0.0e+00 1135.2 709 100.0
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 4.5e-292 1007.7 707 86.0
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 3.0e-251 872.1 709 78.3
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.9e-245 852.8 713 77.8
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 5.6e-202 708.4 684 69.6
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 2.0e-199 699.9 726 65.4
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 5.8e-199 698.4 670 67.9
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 3.8e-198 695.7 709 62.2
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 8.7e-195 684.5 696 65.9
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 2.6e-191 672.9 681 66.8
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-181 640.6 743 62.9
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 3.4e-162 576.2 714 56.2
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 3.4e-162 576.2 737 53.3
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 5.5e-157 558.9 718 55.4
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 3.6e-156 556.2 715 54.4
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 3.6e-156 556.2 715 54.4
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.7e-156 555.8 726 55.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.0e-154 550.4 709 58.1
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.3e-153 545.4 712 54.1
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 4.5e-151 539.3 725 51.0
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 5.0e-150 535.8 713 55.4
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.1e-149 534.6 743 53.8
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 4.2e-149 532.7 694 51.2
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.2e-148 531.2 715 50.9
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.2e-148 531.2 669 60.2
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.8e-148 530.0 530 65.5
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.8e-147 527.3 721 56.4
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.8e-147 527.3 743 56.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 4.0e-147 526.2 747 53.1
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 5.2e-147 525.8 700 49.3
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.2e-147 525.8 674 52.2
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 8.9e-147 525.0 691 49.9
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 4.4e-146 522.7 711 50.1
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.4e-146 522.7 715 54.4
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 9.8e-146 521.5 744 56.7
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 9.8e-146 521.5 747 54.1
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 8.3e-145 518.5 729 57.5
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.1e-144 518.1 748 54.9
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 5.9e-143 512.3 720 53.8
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.3e-142 510.4 697 50.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 2.3e-142 510.4 715 49.7
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 3.9e-142 509.6 750 56.4
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 6.6e-142 508.8 734 48.8
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 3.3e-141 506.5 738 50.7
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.3e-139 500.4 731 52.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 2.3e-139 500.4 690 49.7
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 4.4e-138 496.1 725 51.4
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 5.8e-138 495.7 660 54.8
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 3.7e-137 493.0 740 51.2
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 6.4e-137 492.3 639 56.3
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.4e-136 491.1 731 50.8
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 5.4e-136 489.2 712 52.8
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 9.2e-136 488.4 732 53.7
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 1.6e-135 487.6 752 48.9
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.1e-133 481.5 709 50.9
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-132 478.0 709 49.1
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.8e-132 476.9 728 52.5
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 4.0e-131 473.0 535 55.9
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 8.3e-129 465.3 727 53.2
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 3.2e-128 463.4 732 49.9
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 5.4e-128 462.6 703 52.2
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.2e-127 461.5 655 56.6
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 3.5e-127 459.9 746 47.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.0e-126 456.8 714 54.3
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.1e-124 450.7 738 49.6
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 2.8e-124 450.3 713 54.1
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.8e-124 450.3 710 50.6
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 3.6e-124 449.9 705 49.8
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.4e-123 448.0 666 55.3
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.0e-122 444.1 737 50.5
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.4e-122 443.4 700 50.4
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 2.2e-121 440.7 765 47.8
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.9e-120 437.6 532 51.5
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.2e-119 434.9 666 48.5
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.3e-118 430.6 756 44.6
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 3.3e-117 426.8 742 48.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 7.3e-117 425.6 713 55.0
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.8e-116 423.7 770 51.9
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.1e-115 420.2 740 46.1
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 6.8e-115 419.1 708 52.7
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.9e-113 413.7 730 52.1
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 1.1e-112 411.8 528 53.6
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 2.4e-112 410.6 747 47.3
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 5.4e-112 409.5 696 49.9
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 2.7e-111 407.1 734 51.8
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 7.8e-111 405.6 538 50.7
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.3e-110 404.8 724 52.6
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.1e-109 401.7 527 50.9
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.5e-109 401.4 542 52.8
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.4e-107 394.8 705 52.8
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 2.6e-106 390.6 764 45.2
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 2.9e-105 387.1 707 52.8
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 9.3e-104 382.1 723 50.5
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.7e-102 377.9 715 51.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 8.7e-102 375.6 297 65.7
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.1e-100 370.9 429 58.5
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 3.4e-98 363.6 635 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.7e-97 361.3 719 43.7
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 5.1e-94 349.7 613 43.2
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.4e-90 337.0 724 44.2
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 5.5e-88 329.7 597 41.5
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 5.7e-85 319.7 693 43.0
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.2e-84 315.8 713 40.8
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.9e-81 307.4 387 55.8
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.4e-80 305.1 704 40.6
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-75 288.5 386 56.0
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.2e-73 281.2 851 33.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 5.1e-70 270.0 325 57.2
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 9.1e-67 259.2 473 44.6
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 7.2e-64 249.6 870 30.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.1e-59 235.7 211 59.2
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.1e-51 207.6 197 53.8
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.0e-50 204.9 197 53.8
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.3e-49 202.2 287 48.1
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 8.5e-49 199.5 723 30.6
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 8.5e-49 199.5 199 56.3
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.8e-43 181.8 254 56.7
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.9e-41 174.5 519 32.4
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 8.5e-41 172.9 343 37.6
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.1e-40 172.6 442 33.3
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 6.1e-39 166.8 407 32.7
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 3.4e-37 161.0 302 44.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 5.4e-35 153.7 289 49.1
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 7.5e-29 133.3 224 42.4
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 8.3e-28 129.8 261 44.8
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 4.1e-27 127.5 111 53.2
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 3.5e-26 124.4 88 72.7
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.7e-25 122.1 198 37.9
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 6.2e-23 113.6 77 67.5
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 8.9e-22 109.8 77 64.9
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.7e-20 105.5 121 54.5
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 6.4e-20 103.6 91 63.7
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.1e-19 100.9 175 45.7
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 2.0e-18 98.6 181 39.8
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 7.8e-18 96.7 206 33.5
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.3e-17 95.1 316 30.4
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-16 92.8 138 48.6
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 3.6e-15 87.8 152 43.4
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-14 86.3 105 43.8
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 3.2e-11 74.7 149 36.2
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 9.2e-11 73.2 67 58.2
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 5.1e-09 67.4 59 59.3
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 6.6e-09 67.0 77 44.2
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 6.6e-09 67.0 77 44.2
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.5e-08 65.9 114 40.4
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 3.3e-08 64.7 77 42.9
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 9.5e-08 63.2 126 40.5
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.6e-07 62.4 56 62.5
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.1e-07 62.0 57 56.1
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 4.7e-07 60.8 32 75.0
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 1.4e-06 59.3 60 45.0
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.1e-06 58.2 60 45.0
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 6.8e-06 57.0 126 38.1


User provided reference genes

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