Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 2.5e-65 251.9 122 100.0
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 1.9e-52 209.1 122 82.0
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 1.4e-36 156.4 115 69.6
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 5.2e-31 137.9 122 59.0
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 2.2e-29 132.5 123 59.3
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 1.3e-26 123.2 126 59.5
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 1.1e-25 120.2 120 54.2
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 7.6e-22 107.5 85 60.0
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 6.4e-21 104.4 95 57.9
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 3.9e-18 95.1 121 49.6
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 5.8e-14 81.3 44 75.0
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 1.3e-13 80.1 44 77.3
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 1.7e-13 79.7 109 42.2
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 2.9e-13 79.0 35 85.7
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 2.9e-13 79.0 54 61.1
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 4.9e-13 78.2 59 59.3
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 6.4e-13 77.8 43 72.1
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 6.4e-13 77.8 43 72.1
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 6.4e-13 77.8 43 72.1
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 8.4e-13 77.4 102 43.1
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 8.4e-13 77.4 51 58.8
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 8.4e-13 77.4 40 80.0
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 1.4e-12 76.6 44 75.0
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.9e-12 76.3 49 67.3
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 2.4e-12 75.9 42 76.2
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 3.2e-12 75.5 42 71.4
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 3.2e-12 75.5 35 82.9
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 3.2e-12 75.5 40 72.5
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 4.2e-12 75.1 44 70.5
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 5.4e-12 74.7 56 58.9
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 5.4e-12 74.7 47 63.8
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 5.4e-12 74.7 47 63.8
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 7.1e-12 74.3 94 41.5
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 7.1e-12 74.3 57 54.4
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 7.1e-12 74.3 57 56.1
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 7.1e-12 74.3 33 81.8
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 9.3e-12 73.9 35 80.0
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 9.3e-12 73.9 102 43.1
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 9.3e-12 73.9 60 61.7
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 9.3e-12 73.9 43 72.1
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 1.2e-11 73.6 100 37.0
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 1.2e-11 73.6 35 80.0
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 1.2e-11 73.6 35 80.0
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 1.6e-11 73.2 39 74.4
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 1.6e-11 73.2 48 58.3
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 2.1e-11 72.8 43 72.1
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 2.1e-11 72.8 44 70.5
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 2.7e-11 72.4 79 50.6
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 3.5e-11 72.0 55 61.8
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 3.5e-11 72.0 57 56.1
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 3.5e-11 72.0 62 54.8
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 4.6e-11 71.6 30 86.7
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 4.6e-11 71.6 98 43.9
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 4.6e-11 71.6 104 43.3
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 4.6e-11 71.6 38 71.1
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 6.0e-11 71.2 113 38.9
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 6.0e-11 71.2 113 38.9
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 1.0e-10 70.5 40 72.5
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 1.0e-10 70.5 31 83.9
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 1.0e-10 70.5 33 81.8
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 1.3e-10 70.1 33 81.8
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 1.3e-10 70.1 33 81.8
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 1.3e-10 70.1 33 81.8
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 1.3e-10 70.1 39 69.2
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 1.3e-10 70.1 39 69.2
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 2.3e-10 69.3 35 71.4
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 3.0e-10 68.9 71 46.5
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 3.0e-10 68.9 34 79.4
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 3.9e-10 68.6 30 86.7
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 3.9e-10 68.6 57 50.9
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 5.1e-10 68.2 103 40.8
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 5.1e-10 68.2 97 36.1
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 5.1e-10 68.2 31 83.9
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 6.7e-10 67.8 103 35.0
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 6.7e-10 67.8 31 80.6
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 6.7e-10 67.8 31 80.6
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 6.7e-10 67.8 31 80.6
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 6.7e-10 67.8 31 83.9
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 6.7e-10 67.8 30 80.0
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 8.7e-10 67.4 41 63.4
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 1.1e-09 67.0 45 57.8
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.1e-09 67.0 46 58.7
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 1.5e-09 66.6 70 47.1
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 1.9e-09 66.2 55 54.5
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 2.5e-09 65.9 31 77.4
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 4.3e-09 65.1 101 42.6
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 4.3e-09 65.1 42 66.7
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 4.3e-09 65.1 42 66.7
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 4.3e-09 65.1 33 72.7
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 4.3e-09 65.1 87 41.4
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 5.6e-09 64.7 32 75.0
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 5.6e-09 64.7 72 40.3
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 5.6e-09 64.7 87 39.1
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 5.6e-09 64.7 55 52.7
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 5.6e-09 64.7 37 64.9
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 9.6e-09 63.9 46 56.5
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 9.6e-09 63.9 46 56.5
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 2.1e-08 62.8 28 82.1
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 1.4e-07 60.1 36 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 4.0e-07 58.5 34 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 9.0e-07 57.4 44 50.0
AL6G28340 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 2.6e-06 55.8 30 66.7
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 4.5e-06 55.1 40 50.0


User provided reference genes

Program Settings