Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.7e-63 243.8 121 100.0
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.5e-57 224.2 121 90.9
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 7.2e-57 223.8 121 92.6
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 3.0e-55 218.4 121 89.3
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.2e-49 198.0 119 84.0
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 3.0e-47 191.8 120 82.5
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.0e-43 179.1 120 80.0
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.9e-42 175.3 122 74.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 5.0e-42 174.5 123 78.9
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 9.5e-41 170.2 121 72.7
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 8.0e-40 167.2 121 71.1
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.8e-39 166.0 121 70.2
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 5.2e-39 164.5 122 71.3
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 2.6e-38 162.2 128 66.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.6e-38 162.2 121 69.4
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 8.3e-37 157.1 119 68.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.4e-36 156.4 119 68.1
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 3.1e-36 155.2 119 70.6
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-35 152.9 119 67.2
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 7.8e-35 150.6 121 67.8
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 7.8e-35 150.6 121 66.9
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.7e-34 149.4 120 69.2
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.9e-33 146.0 120 66.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.7e-32 141.4 121 62.0
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 5.2e-31 137.9 124 60.5
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 6.8e-31 137.5 121 61.2
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 8.9e-31 137.1 124 59.7
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.8e-28 129.4 121 56.2
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 3.5e-27 125.2 125 57.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 8.6e-26 120.6 124 55.6
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.4e-20 103.2 122 50.8
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.4e-20 103.2 122 53.3
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.9e-20 102.8 124 52.4
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-20 102.4 122 50.0
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-20 102.4 122 50.0
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.4e-20 102.4 122 50.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-20 102.1 122 50.0
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.2e-20 102.1 122 50.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-20 101.7 122 49.2
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 5.4e-20 101.3 122 51.6
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 5.4e-20 101.3 126 49.2
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 7.0e-20 100.9 119 47.9
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.6e-19 99.8 120 48.3
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.6e-19 99.8 122 51.6
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-19 98.6 123 49.6
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-19 98.6 123 49.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-19 98.6 122 48.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-19 98.6 122 49.2
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.5e-19 98.6 122 49.2
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.5e-19 98.6 122 48.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.6e-19 98.2 122 48.4
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 6.0e-19 97.8 123 49.6
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-19 97.8 123 49.6
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-19 97.8 123 49.6
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 6.0e-19 97.8 123 49.6
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 6.0e-19 97.8 123 49.6
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 7.8e-19 97.4 122 48.4
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 7.8e-19 97.4 117 51.3
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 7.8e-19 97.4 107 56.1
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.0e-18 97.1 123 49.6
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.0e-18 97.1 122 47.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.0e-18 97.1 123 49.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-18 96.7 123 49.6
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.7e-18 96.3 128 45.3
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.9e-18 95.1 123 48.8
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.9e-18 95.1 123 48.8
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 3.9e-18 95.1 121 49.6
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 6.6e-18 94.4 124 48.4
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.9e-17 92.8 121 47.1
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.5e-17 92.4 123 47.2
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.3e-17 92.0 122 47.5
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 3.3e-17 92.0 126 43.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.3e-17 90.9 131 46.6
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 9.5e-17 90.5 130 46.9
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.2e-16 90.1 133 45.9
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.1e-16 89.4 124 45.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.1e-16 89.4 127 47.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 2.8e-16 89.0 129 48.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 2.8e-16 89.0 125 46.4
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.6e-16 88.6 130 48.5
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.8e-15 86.3 131 45.0
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.3e-15 85.9 131 42.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.3e-15 85.9 131 42.0
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.1e-15 85.5 136 44.1
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 3.1e-15 85.5 108 47.2
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.0e-15 85.1 130 45.4
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.0e-15 85.1 129 46.5
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.0e-15 85.1 129 44.2
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.9e-15 84.0 138 39.1
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.9e-15 84.0 124 45.2
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.9e-15 84.0 129 45.0
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.9e-15 84.0 127 46.5
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-14 83.2 134 42.5
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-14 83.2 134 42.5
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.5e-14 83.2 131 41.2
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.5e-14 83.2 108 47.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.5e-14 83.2 123 43.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 3.4e-14 82.0 126 42.1
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.8e-14 81.3 129 43.4
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.8e-14 81.3 125 40.8
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 5.8e-14 81.3 123 44.7
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 7.5e-14 80.9 129 40.3
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.8e-14 80.5 129 41.1
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.3e-13 80.1 121 44.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.7e-13 79.7 127 40.9
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.2e-13 79.3 127 40.9
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-13 79.3 127 41.7
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-13 79.3 127 41.7
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-13 79.3 127 41.7
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.2e-13 79.3 137 41.6
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-13 79.0 126 40.5
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.9e-13 78.2 135 39.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.9e-13 78.2 125 45.6
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.4e-13 77.8 128 41.4
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 8.3e-13 77.4 133 39.1
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 8.3e-13 77.4 121 43.0
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.3e-13 77.4 131 41.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-12 76.6 110 45.5
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.2e-12 75.5 124 43.5
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 9.2e-12 73.9 107 46.7
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 9.2e-12 73.9 110 44.5
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-11 73.6 125 37.6
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-11 73.6 128 38.3
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-11 73.2 129 40.3
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 123 41.5
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-11 71.6 126 41.3
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-11 71.2 123 40.7
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-11 71.2 126 41.3
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 6.0e-11 71.2 123 40.7
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 7.8e-11 70.9 128 43.8
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.3e-10 70.1 135 38.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.3e-10 70.1 129 35.7
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.7e-10 69.7 131 37.4
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 3.0e-10 68.9 132 38.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 6.6e-10 67.8 119 38.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 3.3e-09 65.5 156 33.3
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.3e-09 65.1 113 36.3
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 4.3e-09 65.1 108 38.9
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 5.6e-09 64.7 52 55.8
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.6e-09 64.7 112 39.3
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 5.6e-09 64.7 116 39.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.6e-09 64.7 118 35.6
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 7.3e-09 64.3 120 37.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 9.5e-09 63.9 117 40.2
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 9.5e-09 63.9 121 36.4
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.6e-08 63.2 93 40.9
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.1e-08 62.8 127 36.2
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-08 62.8 131 34.4
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.1e-08 62.8 131 34.4
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.1e-08 62.8 131 34.4
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.1e-08 62.8 122 36.1
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.1e-08 62.8 115 33.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.8e-08 62.4 115 35.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 118 38.1
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 3.6e-08 62.0 128 33.6
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 4.7e-08 61.6 116 39.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 4.7e-08 61.6 116 39.7
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 4.7e-08 61.6 116 39.7
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.2e-08 61.2 103 44.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 8.1e-08 60.8 114 36.0
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-07 60.5 128 36.7
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.8e-07 59.7 109 39.4
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.8e-07 59.7 124 39.5
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.3e-07 59.3 117 38.5
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 3.1e-07 58.9 118 28.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 3.1e-07 58.9 112 45.5
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 3.1e-07 58.9 126 34.1
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 4.0e-07 58.5 46 52.2
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 5.2e-07 58.2 107 41.1
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 5.2e-07 58.2 35 65.7
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 5.2e-07 58.2 109 35.8
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 8.9e-07 57.4 167 33.5
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 8.9e-07 57.4 115 33.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.2e-06 57.0 113 37.2
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 119 37.8
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.4e-06 55.5 115 33.9
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.6e-06 54.3 110 34.5


User provided reference genes

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