Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 2.3e-93 345.5 173 100.0
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 2.2e-91 339.0 173 97.7
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 3.3e-87 325.1 173 94.2
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 4.3e-87 324.7 173 94.8
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 5.6e-87 324.3 173 94.2
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.2e-86 323.2 171 94.7
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 1.2e-86 323.2 173 92.5
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 3.6e-86 321.6 173 91.3
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 6.2e-86 320.9 173 91.9
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 8.1e-86 320.5 173 92.5
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 1.1e-85 320.1 173 91.3
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 1.1e-85 320.1 173 91.9
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.1e-85 320.1 173 91.9
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.4e-85 319.7 173 91.9
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.4e-85 319.7 173 90.8
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 4.0e-85 318.2 173 90.2
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 5.2e-85 317.8 173 90.8
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 6.8e-85 317.4 173 90.8
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 6.8e-85 317.4 173 90.2
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 6.8e-85 317.4 173 90.8
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 2.0e-84 315.8 173 89.6
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 2.0e-84 315.8 173 90.2
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 3.4e-84 315.1 173 89.6
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 3.4e-84 315.1 173 89.0
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 4.4e-84 314.7 173 90.8
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 5.8e-84 314.3 173 87.9
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 7.6e-84 313.9 173 90.2
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 9.9e-84 313.5 173 89.6
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 9.9e-84 313.5 173 89.6
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.3e-83 313.2 173 88.4
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.3e-83 313.2 173 88.4
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 1.3e-83 313.2 173 88.4
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 1.3e-83 313.2 173 89.0
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 1.7e-83 312.8 173 87.9
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 2.2e-83 312.4 173 88.4
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 2.2e-83 312.4 173 87.9
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.2e-83 312.4 171 88.3
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 2.2e-83 312.4 173 88.4
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 2.9e-83 312.0 173 87.9
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 2.9e-83 312.0 173 88.4
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 2.9e-83 312.0 173 88.4
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 3.8e-83 311.6 173 88.4
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 3.8e-83 311.6 173 89.6
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 4.9e-83 311.2 173 87.3
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 4.9e-83 311.2 173 87.9
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 4.9e-83 311.2 173 87.9
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 4.9e-83 311.2 173 87.9
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 6.4e-83 310.8 173 87.3
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 8.4e-83 310.5 173 87.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.4e-83 310.5 172 89.5
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 8.4e-83 310.5 171 88.3
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.4e-82 309.7 173 89.0
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.4e-82 309.7 171 87.7
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.4e-82 309.7 173 87.3
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-82 309.3 173 86.1
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-82 309.3 173 86.1
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 2.4e-82 308.9 173 87.9
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.4e-82 308.9 173 85.5
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 3.2e-82 308.5 173 86.7
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 3.2e-82 308.5 173 86.7
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 4.2e-82 308.1 164 92.7
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 5.4e-82 307.8 173 88.4
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 7.1e-82 307.4 173 88.4
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 7.1e-82 307.4 173 89.6
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 9.3e-82 307.0 173 87.3
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.6e-81 306.2 171 87.7
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.6e-81 306.2 173 87.3
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 2.1e-81 305.8 173 87.9
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 3.5e-81 305.1 173 85.5
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 3.5e-81 305.1 172 87.8
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 7.8e-81 303.9 173 85.5
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.0e-80 303.5 173 87.9
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 1.3e-80 303.1 171 86.5
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 1.3e-80 303.1 173 88.4
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.3e-80 303.1 173 86.1
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 1.3e-80 303.1 173 85.5
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 1.7e-80 302.8 173 87.3
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 2.3e-80 302.4 174 88.5
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 5.1e-80 301.2 173 86.7
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 6.6e-80 300.8 164 90.2
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 8.7e-80 300.4 173 84.4
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 1.1e-79 300.1 173 85.0
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.1e-79 300.1 173 86.7
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 84.4
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 84.4
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 84.4
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 84.4
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 84.4
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 83.8
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.5e-79 299.7 173 82.7
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 2.5e-79 298.9 173 83.8
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 2.5e-79 298.9 173 86.1
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.5e-79 298.9 173 86.1
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 2.5e-79 298.9 173 86.1
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 4.3e-79 298.1 173 82.1
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 7.3e-79 297.4 171 86.0
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 9.6e-79 297.0 173 83.8
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 9.6e-79 297.0 173 83.8
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 9.6e-79 297.0 173 83.8
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 9.6e-79 297.0 173 83.8
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 9.6e-79 297.0 173 85.0
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 1.6e-78 296.2 173 83.2
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.1e-78 295.8 173 84.4
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 2.8e-78 295.4 173 83.2
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 2.8e-78 295.4 171 84.8
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.6e-78 295.0 173 82.7
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.6e-78 295.0 173 84.4
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 4.8e-78 294.7 173 83.2
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 4.8e-78 294.7 173 82.7
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 8.1e-78 293.9 164 87.2
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.1e-77 293.5 173 83.2
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.4e-77 293.1 173 79.8
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 1.8e-77 292.7 173 82.1
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 1.8e-77 292.7 173 83.8
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 3.1e-77 292.0 173 81.5
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.1e-77 292.0 171 83.0
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 4.0e-77 291.6 173 82.1
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 6.9e-77 290.8 173 82.1
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.2e-76 290.0 173 83.8
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.6e-76 288.9 217 69.6
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 2.6e-76 288.9 171 81.3
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 2.6e-76 288.9 173 79.8
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 4.4e-76 288.1 173 80.9
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 7.6e-76 287.3 162 87.7
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 7.6e-76 287.3 173 78.6
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.7e-75 286.2 173 78.6
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 2.9e-75 285.4 173 80.3
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 2.9e-75 285.4 173 80.3
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 4.9e-75 284.6 194 74.7
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 1.9e-74 282.7 173 82.1
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 1.9e-74 282.7 173 80.9
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 4.2e-74 281.6 171 78.9
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 5.4e-74 281.2 173 80.3
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 3.5e-73 278.5 171 80.1
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 3.5e-73 278.5 171 80.1
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.0e-72 275.4 173 80.9
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.1e-72 274.6 148 89.9
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 9.6e-71 270.4 170 76.5
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 2.1e-70 269.2 168 78.6
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 8.1e-70 267.3 146 89.7
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 2.3e-64 249.2 171 67.3
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 5.1e-64 248.1 143 84.6
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.8e-62 242.3 170 67.6
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 3.7e-62 241.9 171 74.3
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 8.1e-62 240.7 173 73.4
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.6e-60 235.7 170 65.9
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 7.6e-60 234.2 173 71.7
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 1.3e-59 233.4 146 74.7
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 7.1e-58 227.6 171 61.4
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 2.7e-57 225.7 169 66.3
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 1.8e-56 223.0 169 65.1
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 2.3e-56 222.6 169 65.7
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 3.9e-56 221.9 171 60.2
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.1e-53 213.8 119 87.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.7e-51 206.5 161 65.2
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 6.9e-45 184.5 102 85.3
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 7.7e-44 181.0 159 65.4
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 4.2e-42 175.3 166 50.0
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 7.9e-41 171.0 141 67.4
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.1e-39 167.2 176 44.9
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 2.2e-38 162.9 131 62.6
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 5.3e-37 158.3 90 83.3
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 2.2e-35 152.9 155 45.8
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 5.0e-35 151.8 171 52.6
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.9e-34 149.8 84 88.1
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 3.6e-33 145.6 84 89.3
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 1.7e-30 136.7 161 44.1
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 2.3e-24 116.3 91 60.4
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.1e-21 107.5 72 72.2
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 8.0e-17 91.3 82 53.7
Cfa024478 Carpinus fangiana HOM05D003442 ORTHO05D122614 2.0e-15 86.7 141 36.9
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.4e-07 59.3 38 73.7


User provided reference genes

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