Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 2.2e-67 258.8 130 100.0
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 2.1e-54 215.7 111 97.3
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.5e-52 209.5 111 92.8
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 2.0e-52 209.1 110 94.5
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 1.7e-51 206.1 111 91.0
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 2.2e-51 205.7 110 93.6
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 8.3e-51 203.8 111 90.1
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.8e-50 202.6 110 90.0
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.6e-49 199.5 107 91.6
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 3.5e-49 198.4 110 89.1
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 4.5e-49 198.0 130 74.6
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 7.8e-49 197.2 110 86.4
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 2.3e-48 195.7 111 85.6
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 1.1e-47 193.4 110 87.3
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 3.3e-47 191.8 110 84.5
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 5.6e-47 191.0 110 83.6
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 7.3e-47 190.7 110 84.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 9.5e-47 190.3 110 83.6
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 9.5e-47 190.3 110 83.6
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.2e-46 189.9 114 80.7
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.2e-46 189.9 114 80.7
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.2e-46 189.9 110 83.6
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 1.6e-46 189.5 110 82.7
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.6e-46 189.5 110 82.7
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 1.6e-46 189.5 110 83.6
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 1.6e-46 189.5 111 82.0
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 2.1e-46 189.1 111 82.0
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 2.1e-46 189.1 110 83.6
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 2.1e-46 189.1 110 82.7
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 2.8e-46 188.7 110 83.6
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 2.8e-46 188.7 110 83.6
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 2.8e-46 188.7 112 81.2
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 3.6e-46 188.3 129 71.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.6e-46 188.3 110 82.7
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.7e-46 188.0 110 82.7
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 4.7e-46 188.0 110 82.7
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 6.1e-46 187.6 110 81.8
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 8.0e-46 187.2 109 83.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 1.0e-45 186.8 132 71.2
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.4e-45 186.4 111 81.1
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.8e-45 186.0 110 81.8
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.8e-45 186.0 110 80.0
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.3e-45 185.7 113 81.4
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.3e-45 185.7 110 82.7
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 2.3e-45 185.7 110 80.9
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 4.0e-45 184.9 110 80.0
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 4.0e-45 184.9 110 80.9
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 4.0e-45 184.9 111 81.1
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 5.2e-45 184.5 109 80.7
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 5.2e-45 184.5 109 80.7
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 6.8e-45 184.1 110 80.9
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 8.9e-45 183.7 110 81.8
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.2e-44 183.3 110 80.0
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.5e-44 183.0 109 79.8
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 2.0e-44 182.6 110 80.0
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.0e-44 182.6 125 72.0
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 2.0e-44 182.6 130 71.5
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 2.6e-44 182.2 110 79.1
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.6e-44 182.2 115 74.8
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 2.6e-44 182.2 110 80.9
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 3.4e-44 181.8 110 79.1
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 3.4e-44 181.8 110 80.0
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 3.4e-44 181.8 115 77.4
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 4.4e-44 181.4 110 79.1
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 4.4e-44 181.4 109 78.0
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 5.8e-44 181.0 115 77.4
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 5.8e-44 181.0 115 77.4
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 7.5e-44 180.6 110 78.2
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 7.5e-44 180.6 113 77.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.8e-44 180.3 110 77.3
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 9.8e-44 180.3 110 77.3
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 1.3e-43 179.9 115 76.5
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 1.3e-43 179.9 115 76.5
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 1.3e-43 179.9 110 77.3
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 1.7e-43 179.5 110 80.0
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.7e-43 179.5 110 80.0
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.2e-43 179.1 110 76.4
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 2.9e-43 178.7 110 78.2
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 3.7e-43 178.3 110 78.2
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 4.9e-43 177.9 110 79.1
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 4.9e-43 177.9 110 76.4
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 6.4e-43 177.6 115 75.7
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 6.4e-43 177.6 113 75.2
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 8.3e-43 177.2 109 79.8
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 8.3e-43 177.2 110 78.2
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 8.3e-43 177.2 115 75.7
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.3e-43 177.2 110 75.5
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 1.1e-42 176.8 115 75.7
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.1e-42 176.8 110 75.5
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.1e-42 176.8 110 78.2
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.4e-42 176.4 109 78.0
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.4e-42 176.4 110 75.5
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.4e-42 175.6 109 75.2
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 3.2e-42 175.3 109 79.8
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.2e-42 175.3 110 74.5
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 4.1e-42 174.9 115 74.8
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 4.1e-42 174.9 115 74.8
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 4.1e-42 174.9 115 74.8
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 4.1e-42 174.9 115 74.8
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.4e-42 174.5 109 74.3
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.4e-42 174.5 109 74.3
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 7.0e-42 174.1 115 71.3
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 7.0e-42 174.1 112 76.8
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 9.2e-42 173.7 110 76.4
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 9.2e-42 173.7 110 76.4
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 2.0e-41 172.6 110 74.5
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.0e-41 172.6 110 74.5
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.7e-41 172.2 110 77.3
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 3.5e-41 171.8 110 75.5
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 4.6e-41 171.4 115 73.9
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 6.0e-41 171.0 100 82.0
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 6.0e-41 171.0 101 82.2
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 7.8e-41 170.6 110 74.5
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 1.3e-40 169.9 110 74.5
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-40 169.1 110 73.6
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 2.3e-40 169.1 110 72.7
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.3e-40 169.1 121 70.2
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 5.0e-40 167.9 115 71.3
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 6.6e-40 167.5 110 72.7
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 8.6e-40 167.2 115 71.3
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 8.6e-40 167.2 110 74.5
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 2.5e-39 165.6 106 76.4
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 2.5e-39 165.6 123 70.7
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.5e-39 165.6 121 67.8
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 1.2e-38 163.3 110 70.9
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 2.1e-38 162.5 127 63.0
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.4e-37 159.8 102 75.5
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.8e-37 159.5 94 83.0
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 2.3e-37 159.1 102 73.5
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 9.8e-36 153.7 143 55.2
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.7e-35 151.8 100 76.0
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 3.7e-35 151.8 89 83.1
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 4.9e-35 151.4 113 63.7
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 8.3e-35 150.6 89 82.0
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 8.3e-35 150.6 89 80.9
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 1.1e-34 150.2 123 60.2
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.4e-34 149.1 89 82.0
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 4.1e-34 148.3 113 62.8
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 5.4e-34 147.9 96 79.2
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 9.2e-34 147.1 88 81.8
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 4.6e-33 144.8 89 77.5
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.3e-32 143.3 103 65.0
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.7e-32 142.9 114 61.4
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 2.3e-32 142.5 88 77.3
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.0e-32 142.1 100 68.0
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 3.9e-32 141.7 129 59.7
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 1.1e-31 140.2 134 55.2
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 9.5e-31 137.1 94 69.1
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 2.3e-29 132.5 125 51.2
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 4.0e-29 131.7 106 60.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.2e-28 130.2 85 77.6
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.0e-28 129.4 118 58.5
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 3.4e-28 128.6 106 59.4
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 8.3e-27 124.0 79 74.7
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 2.3e-24 115.9 74 75.7
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 3.6e-22 108.6 75 73.3
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 5.8e-20 101.3 93 47.3
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.6e-17 93.2 55 78.2
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 1.9e-15 86.3 52 82.7
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 2.8e-14 82.4 93 41.9
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 4.8e-14 81.6 48 77.1
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 1.4e-13 80.1 52 71.2
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 2.6e-12 75.9 91 46.2
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 4.4e-12 75.1 59 57.6
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 2.7e-09 65.9 86 34.9
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 1.5e-07 60.1 82 39.0


User provided reference genes

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