Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.0e-51 205.3 90 100.0
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 2.7e-24 115.2 62 74.2
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 4.3e-22 107.8 62 74.2
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.2e-19 99.8 55 72.7
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 2.0e-19 99.0 66 62.1
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.3e-18 96.3 62 66.1
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 8.4e-18 93.6 58 69.0
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.4e-17 92.8 61 63.9
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 5.4e-17 90.9 61 57.4
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 7.1e-17 90.5 54 63.0
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.2e-16 89.7 58 58.6
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.2e-16 89.7 66 53.0
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.7e-16 88.6 63 60.3
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 7.8e-16 87.0 57 63.2
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 7.8e-16 87.0 65 56.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 7.8e-16 87.0 65 53.8
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 7.8e-16 87.0 65 53.8
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 7.8e-16 87.0 65 53.8
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 1.7e-15 85.9 65 55.4
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 3.9e-15 84.7 46 67.4
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.9e-15 84.7 65 53.8
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 5.1e-15 84.3 44 70.5
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 6.6e-15 84.0 43 69.8
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 6.6e-15 84.0 47 61.7
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 8.7e-15 83.6 64 46.9
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 8.7e-15 83.6 44 65.9
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 8.7e-15 83.6 56 62.5
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 8.7e-15 83.6 61 54.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 8.7e-15 83.6 44 70.5
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.1e-14 83.2 44 65.9
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.1e-14 83.2 64 54.7
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.5e-14 82.8 46 63.0
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.5e-14 82.8 61 54.1
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 1.5e-14 82.8 60 55.0
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.5e-14 82.8 65 50.8
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 1.9e-14 82.4 59 57.6
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.5e-14 82.0 66 48.5
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.5e-14 82.0 48 64.6
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 4.3e-14 81.3 54 55.6
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 5.6e-14 80.9 66 47.0
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.6e-14 80.9 45 64.4
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 7.3e-14 80.5 66 48.5
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 9.6e-14 80.1 44 68.2
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.2e-13 79.7 45 62.2
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.6e-13 79.3 45 62.2
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.6e-13 79.3 45 64.4
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 2.8e-13 78.6 45 62.2
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 3.6e-13 78.2 43 62.8
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 4.7e-13 77.8 65 53.8
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 4.7e-13 77.8 65 53.8
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 4.7e-13 77.8 43 60.5
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 4.7e-13 77.8 43 67.4
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 4.7e-13 77.8 57 50.9
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 4.7e-13 77.8 45 62.2
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 4.7e-13 77.8 66 48.5
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.2e-13 77.4 59 50.8
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 6.2e-13 77.4 43 58.1
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 6.2e-13 77.4 58 55.2
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 8.1e-13 77.0 56 51.8
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 8.1e-13 77.0 43 62.8
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 8.1e-13 77.0 58 51.7
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.4e-12 76.3 59 50.8
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 1.4e-12 76.3 44 59.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 2.4e-12 75.5 67 44.8
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.4e-12 75.5 49 55.1
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.4e-12 75.5 49 55.1
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.4e-12 75.5 49 55.1
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.4e-12 75.5 43 62.8
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 3.1e-12 75.1 43 58.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 3.1e-12 75.1 84 36.9
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 3.1e-12 75.1 45 60.0
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 4.0e-12 74.7 50 56.0
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.0e-12 74.7 56 55.4
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.0e-12 74.7 45 57.8
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 4.0e-12 74.7 64 45.3
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 6.9e-12 73.9 63 49.2
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.9e-12 73.9 43 58.1
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 9.0e-12 73.6 43 58.1
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 9.0e-12 73.6 43 58.1
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.2e-11 73.2 61 50.8
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.2e-11 73.2 43 60.5
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.5e-11 72.8 43 55.8
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.4e-11 71.6 45 55.6
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.4e-11 71.6 43 58.1
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 4.4e-11 71.2 47 55.3
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.4e-11 71.2 48 56.2
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 7.6e-11 70.5 53 45.3
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.8e-10 68.2 48 54.2
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 4.9e-10 67.8 58 43.1
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.9e-10 67.8 56 53.6
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 2.4e-09 65.5 42 54.8
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.3e-07 59.7 45 53.3
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.9e-07 58.2 44 54.5
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 5.1e-07 57.8 60 40.0


User provided reference genes

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