Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 5967.1 3011 100.0
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 4746.8 2987 80.6
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 4100.8 2990 70.6
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 4075.8 2993 70.7
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 4075.4 2990 69.9
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 4001.1 2994 69.4
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 3729.9 2992 64.8
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 3720.2 2893 67.7
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 2888.6 2085 71.8
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2809.2 2135 68.2
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2764.2 3029 50.0
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2672.1 3029 48.6
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2614.3 3037 48.9
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2603.9 3009 48.2
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2587.8 3014 47.5
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2575.0 3063 46.5
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2561.6 3041 47.7
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2545.8 3069 46.3
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2533.4 3032 46.6
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2504.9 3067 45.9
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2503.4 3088 45.6
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2498.8 3004 46.6
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2491.1 3032 45.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2489.1 3064 45.4
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2419.4 2974 45.8
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2414.8 3016 45.5
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2409.4 3016 45.7
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2401.3 3127 44.6
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2382.8 3034 44.9
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2331.6 3688 39.7
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2316.6 3122 43.2
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2298.5 3014 44.3
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2262.6 2656 47.5
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2259.6 3046 42.3
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2232.6 2733 46.2
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2207.9 3297 40.6
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2161.0 3018 41.1
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2152.5 3018 40.8
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2143.2 3042 42.5
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2092.0 3050 40.4
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 2088.9 1145 92.5
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2086.6 3062 40.6
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2068.1 3041 42.1
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2060.4 3031 39.8
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2051.2 3018 40.2
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2051.2 3020 40.5
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2042.7 3023 39.8
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2042.7 3023 39.8
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2040.4 3031 39.6
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2038.5 3048 40.2
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2031.1 3013 39.5
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2015.0 3056 39.9
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2010.0 3052 39.7
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2004.6 3049 39.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2001.5 3060 39.2
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1997.2 3013 39.1
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1986.5 3045 41.0
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1968.7 3060 38.9
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1967.2 3056 39.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1959.9 3083 39.0
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1958.3 3020 39.9
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1953.3 3055 39.2
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1946.4 2019 52.6
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1939.1 3009 39.5
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1920.6 3020 39.3
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1913.3 3071 38.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1910.2 3055 38.5
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1884.0 3104 37.9
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1864.4 2704 40.1
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1850.1 2910 38.6
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1808.9 2975 37.8
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1757.3 2305 42.8
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1721.1 2847 37.7
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1644.8 3127 35.5
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1573.5 939 84.9
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1495.7 2583 37.7
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1449.1 3099 32.0
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1424.8 1532 50.4
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1388.2 1593 48.1
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1374.8 1097 63.7
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1326.2 1255 53.9
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1312.0 1482 47.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1253.8 1506 47.5
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1236.5 1182 54.6
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1224.9 1022 61.4
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1190.6 1157 53.7
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1154.8 1561 42.4
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1142.9 1142 51.7
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1102.8 660 83.9
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1098.2 3014 28.6
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1091.3 943 59.5
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.1e-311 1073.5 2549 31.2
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.5e-291 1008.1 1017 51.6
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 2.7e-285 987.3 1839 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.7e-279 968.0 1952 33.9
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.6e-274 951.4 865 56.9
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 8.1e-274 949.1 1417 41.5
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.1e-262 912.1 1650 34.8
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.6e-245 855.1 1107 44.9
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.8e-244 851.7 1879 32.5
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 2.4e-233 814.7 1125 41.3
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 8.5e-231 806.2 1906 31.0
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 6.7e-220 770.0 1868 31.4
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.3e-207 729.2 1731 30.8
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 2.3e-183 648.7 1569 31.7
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.3e-159 568.9 411 66.9
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.3e-159 568.9 2139 26.0
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.5e-147 529.6 473 57.3
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 6.4e-146 524.2 487 56.9
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 2.0e-131 476.1 891 34.5
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.3e-127 463.4 922 34.7
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.4e-121 443.4 1283 27.3
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 4.2e-121 441.8 1321 26.8
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 5.1e-119 434.9 1229 27.7
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 3.0e-111 409.1 880 32.4
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 9.1e-108 397.5 941 30.5
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 2.6e-107 396.0 862 31.7
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 5.7e-102 378.3 1251 26.9
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 2.2e-101 376.3 281 66.9
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 9.7e-86 324.3 887 29.2
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.3e-74 287.3 204 70.6
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 2.9e-74 286.2 271 51.3
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 3.3e-73 282.7 430 39.5
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.3e-71 276.6 1190 25.2
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 2.0e-70 273.5 233 57.9
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 8.6e-58 231.5 372 40.1
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.0e-50 208.0 149 71.1
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.3e-50 207.6 157 65.0
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.3e-50 206.8 147 68.0
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 8.6e-50 204.9 146 67.8
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 1.6e-43 184.1 524 29.8
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 2.5e-41 176.8 156 55.8
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-39 169.1 615 25.4
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 9.6e-33 148.3 123 63.4
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 9.0e-31 141.7 803 20.8
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 5.8e-30 139.0 80 83.8
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 2.6e-22 113.6 78 65.4
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 9.9e-22 111.7 340 28.8
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-21 110.5 344 25.0
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 6.4e-21 109.0 178 36.0
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.9e-20 107.5 73 67.1
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 9.3e-20 105.1 64 76.6
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 4.0e-15 89.7 126 45.2
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 2.9e-13 83.6 160 33.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 4.9e-13 82.8 43 88.4
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 4.2e-12 79.7 42 95.2
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 9.3e-12 78.6 178 28.7
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.0e-10 75.1 65 55.4
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 2.3e-10 73.9 66 51.5
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 5.7e-09 69.3 495 21.8
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 9.6e-09 68.6 324 23.1
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 1.6e-08 67.8 560 20.7
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 3.7e-08 66.6 211 24.2
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 4.0e-07 63.2 44 63.6
VMungo0251G2589 Vigna mungo HOM05D004524 ORTHO05D005477 1.2e-06 61.6 51 64.7
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 1.5e-06 61.2 500 21.0
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 3.4e-06 60.1 522 20.9
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 7.6e-06 58.9 38 68.4
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 7.6e-06 58.9 483 19.0


User provided reference genes

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