Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 0.0e+00 1443.7 699 100.0
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 0.0e+00 1214.5 680 88.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 0.0e+00 1139.0 700 80.7
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 3.8e-275 951.4 699 67.4
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.6e-268 928.7 699 66.7
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.4e-266 922.9 697 66.7
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 3.0e-264 915.2 692 66.8
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.7e-251 872.8 678 66.2
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 5.2e-216 755.0 699 57.4
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 6.4e-206 721.5 678 56.8
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.7e-174 617.1 688 48.7
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.3e-166 590.9 689 45.6
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 3.5e-156 556.2 687 45.0
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 5.3e-152 542.3 688 44.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 3.4e-151 539.7 694 43.2
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 2.9e-150 536.6 694 42.8
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.2e-149 532.7 690 43.2
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 7.1e-149 531.9 687 42.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 5.1e-147 525.8 701 43.4
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 8.7e-147 525.0 712 42.8
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 9.7e-146 521.5 687 40.9
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.3e-145 521.2 732 40.6
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.1e-144 518.1 694 42.5
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.8e-144 517.3 725 41.2
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.1e-144 516.5 679 43.0
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.3e-142 511.1 713 42.1
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 3.2e-141 506.5 693 42.4
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 2.0e-138 497.3 701 40.2
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.5e-138 496.9 649 42.8
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 6.3e-137 492.3 705 40.7
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 6.9e-136 488.8 426 59.4
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 2.6e-135 486.9 690 40.9
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.3e-134 484.6 687 40.2
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.2e-133 479.6 611 43.2
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 2.1e-132 477.2 697 41.0
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 2.8e-129 466.8 690 39.7
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 8.2e-129 465.3 687 39.2
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.1e-128 463.4 688 38.2
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.5e-127 461.1 684 39.0
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 2.2e-126 457.2 596 41.3
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 6.1e-124 449.1 690 39.1
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 1.6e-119 434.5 680 37.6
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 4.2e-117 426.4 714 37.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 2.3e-115 420.6 685 38.2
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 2.3e-115 420.6 698 37.8
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 3.3e-114 416.8 686 38.0
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 3.3e-114 416.8 679 38.3
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 1.2e-111 408.3 677 37.5
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.9e-111 406.0 684 37.9
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 6.5e-110 402.5 696 37.1
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 8.5e-110 402.1 664 38.4
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.1e-109 401.7 663 37.6
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.9e-109 401.0 667 37.9
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 7.2e-109 399.1 696 35.9
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 1.6e-108 397.9 546 43.2
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 3.6e-108 396.7 693 34.8
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 4.7e-108 396.4 654 36.9
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.0e-107 395.2 677 35.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.0e-107 393.7 661 35.7
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 1.2e-106 391.7 645 35.5
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.5e-106 391.3 685 35.9
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 3.4e-106 390.2 655 36.8
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 4.4e-106 389.8 688 34.6
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.3e-105 388.3 701 37.5
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.1e-104 383.6 659 36.6
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 5.4e-104 382.9 680 36.3
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 9.1e-104 382.1 647 36.6
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.7e-103 380.6 603 38.1
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 3.8e-102 376.7 651 35.8
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 5.0e-102 376.3 650 36.2
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 6.6e-102 375.9 573 39.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.5e-101 374.8 559 38.1
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.5e-101 374.0 702 35.8
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 3.3e-101 373.6 685 35.2
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 8.0e-100 369.0 706 35.7
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 8.0e-100 369.0 688 34.2
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 2.0e-98 364.4 577 38.0
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 2.2e-97 360.9 739 33.4
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.8e-96 357.8 507 41.4
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 5.4e-96 356.3 595 38.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.7e-95 354.0 691 35.7
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 8.6e-94 349.0 604 36.8
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 5.6e-93 346.3 704 33.9
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 1.6e-92 344.7 603 33.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 4.7e-92 343.2 684 34.2
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 3.2e-88 330.5 715 32.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.5e-85 320.9 580 34.1
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 8.3e-81 305.8 414 40.3
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 2.7e-79 300.8 539 35.4
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.5e-77 295.0 633 33.8
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.5e-74 285.0 437 39.6
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 9.9e-74 282.3 436 37.2
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 2.1e-71 274.6 367 40.3
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 8.9e-67 259.2 704 30.7
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.2e-66 258.8 704 30.7
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 4.6e-63 246.9 682 28.3
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 4.4e-58 230.3 719 29.6
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 4.2e-56 223.8 402 36.6
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.9e-48 198.4 324 38.0
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.9e-46 190.7 317 33.8
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.0e-42 178.3 194 49.0
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.0e-39 166.8 374 33.7
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.1e-31 141.7 150 52.0
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 6.1e-23 113.6 146 41.8
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.2e-20 105.1 145 39.3
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.6e-18 98.2 92 54.3
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.6e-18 98.2 92 54.3
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.0e-17 96.3 425 25.2
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 4.2e-16 90.9 98 46.9
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 7.4e-13 80.1 212 30.7
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 7.4e-13 80.1 395 22.5
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.5e-10 71.2 215 25.6
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 5.9e-10 70.5 48 68.8
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 1.5e-08 65.9 315 26.0
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.2e-07 62.8 82 43.9
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.2e-07 62.8 92 40.2
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.6e-07 62.4 37 81.1
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 2.7e-07 61.6 30 93.3


User provided reference genes

Program Settings