Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.5e-124 449.5 219 100.0
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 8.9e-122 440.3 219 98.6
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.0e-121 439.1 219 97.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.6e-118 429.5 219 94.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.3e-116 421.4 219 92.2
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 5.6e-116 421.0 219 91.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 7.3e-116 420.6 219 91.3
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.6e-115 419.5 219 93.6
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.0e-114 416.8 219 92.7
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.6e-107 391.7 219 84.0
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 8.1e-107 390.6 220 85.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 2.0e-105 386.0 220 84.5
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.6e-105 385.6 220 85.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.3e-104 383.3 220 85.0
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.2e-104 382.5 221 85.1
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 6.4e-104 380.9 220 85.0
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.1e-103 380.2 220 84.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.4e-103 379.8 219 83.1
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.9e-103 379.4 193 93.8
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 2.4e-103 379.0 221 83.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.4e-103 379.0 221 83.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.2e-103 378.6 220 85.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.2e-103 378.6 221 83.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.2e-103 378.6 220 84.1
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 7.1e-103 377.5 220 83.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.2e-103 377.1 219 82.6
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.6e-102 376.3 221 83.3
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.6e-102 376.3 219 80.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 4.6e-102 374.8 220 83.6
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 6.0e-102 374.4 221 83.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 6.0e-102 374.4 220 83.2
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 7.8e-102 374.0 221 81.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 7.8e-102 374.0 219 81.7
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.0e-101 373.6 220 81.8
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.3e-101 373.2 221 81.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-101 372.9 222 82.9
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.3e-101 372.5 220 83.6
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.3e-101 372.5 220 82.3
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.0e-101 372.1 221 81.0
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 8.6e-101 370.5 220 84.1
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-100 370.2 220 85.0
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.5e-100 369.8 220 81.4
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.3e-100 368.6 219 79.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.6e-99 366.3 220 79.5
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.8e-99 365.5 220 80.0
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 6.2e-99 364.4 220 80.0
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.4e-98 363.2 220 80.9
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.1e-98 362.1 220 81.4
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 4.0e-98 361.7 220 79.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 5.2e-98 361.3 220 80.5
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 8.9e-98 360.5 220 80.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.2e-97 360.1 238 76.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.4e-97 358.2 220 80.0
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.7e-96 355.1 219 78.1
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 4.9e-96 354.8 220 80.0
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.2e-95 352.1 220 78.2
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 5.4e-95 351.3 221 76.0
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 9.2e-95 350.5 219 76.3
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.1e-94 349.4 222 78.8
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.7e-94 349.0 219 77.2
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 2.7e-94 349.0 219 77.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 80.0
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 78.2
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.3e-93 345.9 196 85.2
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.5e-92 343.2 220 77.3
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.3e-92 342.0 220 76.8
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 3.3e-92 342.0 199 82.9
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 3.3e-92 342.0 232 72.8
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.6e-92 341.3 229 75.5
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 9.6e-92 340.5 220 75.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 75.9
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.6e-91 339.7 319 59.2
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 4.7e-91 338.2 221 76.9
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.1e-90 337.0 220 76.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.8e-90 336.3 221 76.5
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.0e-89 332.8 220 75.0
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.4e-89 332.0 193 82.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 4.4e-89 331.6 194 83.0
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.8e-89 331.3 210 76.7
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 9.9e-89 330.5 221 74.2
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 9.9e-89 330.5 194 82.0
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.3e-88 330.1 194 82.0
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.1e-87 327.0 300 60.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 7.1e-87 324.3 198 80.8
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 2.1e-86 322.8 194 80.4
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 2.7e-86 322.4 221 71.0
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.7e-86 322.4 195 79.5
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 3.5e-86 322.0 212 75.0
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.5e-86 322.0 198 78.3
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 6.0e-86 321.2 220 71.4
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 3.0e-85 318.9 222 73.4
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 3.0e-85 318.9 222 73.4
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 8.7e-85 317.4 194 79.4
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 71.5
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-84 316.6 221 71.9
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 4.3e-84 315.1 223 71.7
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-83 313.5 220 70.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-83 313.5 220 70.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 8.1e-83 310.8 220 70.5
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.4e-82 310.1 220 71.4
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.4e-82 309.3 220 70.0
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.0e-82 308.5 194 78.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 9.0e-82 307.4 221 69.2
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 9.0e-82 307.4 221 69.2
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.0e-81 306.2 221 71.5
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.0e-81 306.2 289 58.8
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-80 303.1 204 72.5
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.9e-79 299.7 183 79.8
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.9e-79 299.7 219 66.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 4.2e-79 298.5 157 90.4
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 9.3e-79 297.4 197 75.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.3e-77 293.5 192 71.4
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.1e-76 290.4 209 69.4
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.5e-76 289.3 219 62.6
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.1e-74 282.3 213 63.4
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.1e-74 282.3 213 64.3
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 4.9e-72 275.0 222 62.2
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 4.9e-72 275.0 162 84.6
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 8.4e-72 274.2 169 80.5
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 8.4e-72 274.2 172 77.3
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 3.2e-71 272.3 179 76.5
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-70 269.6 223 62.3
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-70 269.6 223 62.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 2.7e-70 269.2 221 59.3
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 6.7e-69 264.6 218 62.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 6.2e-67 258.1 222 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.8e-65 251.5 195 61.5
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.8e-65 251.5 168 70.8
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 7.6e-65 251.1 195 68.2
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 9.3e-63 244.2 219 53.0
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.0e-61 240.7 222 53.2
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.6e-59 233.4 193 59.1
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 9.3e-55 217.6 182 62.1
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.8e-51 205.3 161 62.1
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.4e-47 193.7 219 45.7
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.1e-46 189.9 151 60.3
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 3.6e-46 189.1 93 94.6
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 4.6e-46 188.7 99 90.9
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.6e-38 163.7 224 39.7
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-37 161.0 248 42.3
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.2e-35 153.3 243 37.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 7.7e-33 144.8 222 40.1
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.9e-31 140.2 84 79.8
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.1e-30 136.7 84 75.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.5e-28 128.3 140 48.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.1e-23 114.4 92 60.9
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.7e-20 102.1 82 67.1
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 4.0e-13 79.3 142 40.8
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 9.2e-10 68.2 205 25.4
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 3.6e-06 56.2 37 64.9


User provided reference genes

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