Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.6e-95 352.8 188 100.0
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 1.6e-79 299.7 171 91.8
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 1.4e-78 296.6 174 88.5
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 6.7e-78 294.3 174 88.5
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 2.7e-74 282.3 164 88.4
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 5.9e-74 281.2 174 82.8
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.0e-73 280.4 165 84.8
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.7e-73 279.6 164 85.4
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 2.9e-73 278.9 184 83.2
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 3.8e-73 278.5 174 81.6
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 5.0e-73 278.1 175 85.1
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 6.5e-73 277.7 166 85.5
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 6.5e-73 277.7 174 81.0
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 6.5e-73 277.7 164 84.8
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.9e-72 276.2 166 84.3
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 3.2e-72 275.4 167 83.2
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 3.2e-72 275.4 164 84.8
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 3.2e-72 275.4 174 82.2
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 3.2e-72 275.4 164 84.1
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 4.2e-72 275.0 164 83.5
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 4.2e-72 275.0 174 81.6
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 7.2e-72 274.2 165 84.8
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 9.4e-72 273.9 174 81.6
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 9.4e-72 273.9 166 83.7
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.6e-71 273.1 176 84.1
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.6e-71 273.1 164 84.8
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 2.1e-71 272.7 164 83.5
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 2.1e-71 272.7 164 82.9
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 2.7e-71 272.3 176 80.1
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 2.7e-71 272.3 174 81.0
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 4.7e-71 271.6 164 84.1
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 4.7e-71 271.6 166 83.1
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 4.7e-71 271.6 163 83.4
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 4.7e-71 271.6 164 84.8
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 6.1e-71 271.2 163 82.8
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.0e-70 270.4 174 79.9
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 1.0e-70 270.4 175 80.6
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.0e-70 270.4 175 80.6
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 1.0e-70 270.4 174 80.5
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 1.4e-70 270.0 174 79.9
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 1.4e-70 270.0 174 79.3
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 1.8e-70 269.6 168 82.1
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.8e-70 269.6 165 83.0
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 1.8e-70 269.6 164 82.9
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 3.0e-70 268.9 174 79.9
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 3.0e-70 268.9 174 80.5
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 4.0e-70 268.5 163 83.4
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 5.2e-70 268.1 174 79.9
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 5.2e-70 268.1 167 79.6
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 5.2e-70 268.1 175 81.1
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 6.8e-70 267.7 164 81.7
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 6.8e-70 267.7 182 78.6
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 8.8e-70 267.3 174 79.3
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 1.5e-69 266.5 165 82.4
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 1.5e-69 266.5 159 84.9
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 1.5e-69 266.5 174 80.5
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 2.0e-69 266.2 164 81.7
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 3.4e-69 265.4 175 79.4
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 4.4e-69 265.0 165 82.4
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 5.7e-69 264.6 176 81.2
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 1.3e-68 263.5 176 80.1
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.7e-68 263.1 164 79.9
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.7e-68 263.1 175 79.4
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.2e-68 262.7 160 83.8
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 2.8e-68 262.3 176 79.0
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.7e-68 261.9 161 81.4
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 4.8e-68 261.5 167 79.6
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 6.3e-68 261.2 176 78.4
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 8.3e-68 260.8 161 82.0
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.1e-67 260.4 175 80.6
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 1.4e-67 260.0 174 75.9
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 1.8e-67 259.6 169 78.7
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 3.1e-67 258.8 174 78.7
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 5.4e-67 258.1 170 83.5
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 7.0e-67 257.7 175 77.7
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 1.2e-66 256.9 175 78.3
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.0e-66 256.1 175 77.7
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 2.0e-66 256.1 174 81.6
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.5e-66 255.0 175 76.6
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 5.9e-66 254.6 200 70.5
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.0e-65 253.8 170 79.4
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.0e-65 253.8 166 77.7
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.1e-64 250.4 164 79.3
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 1.9e-64 249.6 156 80.1
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 1.9e-64 249.6 203 70.0
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 2.5e-64 249.2 166 75.3
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 3.2e-64 248.8 156 79.5
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.2e-63 246.9 165 76.4
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 1.6e-63 246.5 168 78.6
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 1.6e-63 246.5 163 78.5
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 1.6e-63 246.5 190 73.2
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 6.1e-63 244.6 163 77.3
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 1.4e-62 243.4 169 77.5
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 2.3e-62 242.7 160 77.5
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 4.0e-62 241.9 167 77.8
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 5.2e-62 241.5 179 72.1
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 5.2e-62 241.5 179 72.1
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 5.2e-62 241.5 179 72.1
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 5.2e-62 241.5 179 72.1
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 5.2e-62 241.5 179 72.1
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 6.8e-62 241.1 177 72.3
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 1.2e-61 240.4 172 72.1
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 2.0e-61 239.6 179 70.9
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 4.4e-61 238.4 179 72.1
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 7.5e-61 237.7 179 71.5
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 7.5e-61 237.7 205 65.4
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 2.2e-60 236.1 179 70.9
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 4.9e-60 235.0 179 69.8
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 4.9e-60 235.0 179 69.8
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 4.9e-60 235.0 179 69.8
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 6.3e-60 234.6 177 71.8
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 6.3e-60 234.6 179 69.8
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 6.3e-60 234.6 179 70.4
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 8.3e-60 234.2 179 71.5
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 8.3e-60 234.2 179 70.9
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 1.1e-59 233.8 179 69.3
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 1.4e-59 233.4 200 66.0
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 1.8e-59 233.0 157 75.8
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 2.0e-58 229.6 180 71.7
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 2.0e-58 229.6 152 81.6
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 3.5e-58 228.8 173 69.4
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 6.6e-57 224.6 190 66.3
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 1.5e-56 223.4 156 69.9
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 4.3e-56 221.9 194 64.9
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 1.6e-55 219.9 162 69.1
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 1.0e-54 217.2 162 69.1
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 4.4e-53 211.8 163 66.3
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 4.9e-52 208.4 170 62.4
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 4.1e-51 205.3 118 83.9
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 6.6e-49 198.0 132 76.5
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 6.6e-49 198.0 183 57.4
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 8.6e-49 197.6 174 63.8
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.1e-43 180.6 164 57.9
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.9e-43 179.9 156 59.6
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 2.4e-43 179.5 155 60.0
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 3.2e-43 179.1 170 55.3
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 6.2e-31 138.3 85 89.4
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.3e-12 77.4 153 32.0
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 9.3e-11 71.2 158 27.2
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 6.0e-10 68.6 162 30.2
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 6.2e-07 58.5 149 29.5
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 6.2e-07 58.5 149 30.2
Phvul.001G085600 Phaseolus vulgaris HOM05D000182 ORTHO05D000112 8.1e-07 58.2 148 27.7
TAR622G1379 Trochodendron aralioides HOM05D001489 ORTHO05D001380 8.1e-07 58.2 152 29.6
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.1e-06 57.8 149 30.2
PGSC0003DMG402004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 1.1e-06 57.8 162 28.4
SGA_v2.0_scaffold75G24750 Striga asiatica HOM05D000182 ORTHO05D000112 1.1e-06 57.8 139 30.2
VMungo1383G3121 Vigna mungo HOM05D000182 ORTHO05D000112 1.4e-06 57.4 148 27.7
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 5.3e-06 55.5 149 29.5
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 6.9e-06 55.1 150 28.7
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 6.9e-06 55.1 149 28.9
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 6.9e-06 55.1 152 30.3
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 9.0e-06 54.7 149 28.9
Pp3c3_9390 Physcomitrium patens HOM05D006073 ORTHO05D007354 9.0e-06 54.7 153 24.8
PGR119G1759 Punica granatum HOM05D001489 ORTHO05D001380 9.0e-06 54.7 146 28.8


User provided reference genes

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