Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 0.0e+00 1365.1 704 100.0
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 0.0e+00 1301.6 705 95.6
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 0.0e+00 1245.7 710 90.7
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 0.0e+00 1226.1 706 89.9
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 0.0e+00 1195.6 707 86.8
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 0.0e+00 1185.6 707 86.4
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 0.0e+00 1183.7 704 86.1
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 0.0e+00 1176.0 709 85.6
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 0.0e+00 1149.8 706 84.4
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 0.0e+00 1082.4 794 72.9
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 2.2e-286 988.8 730 71.9
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 1.2e-284 983.0 718 70.8
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 8.5e-283 976.9 724 72.8
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 3.7e-278 961.4 718 71.7
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 4.5e-276 954.5 719 69.1
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 1.3e-275 953.0 729 69.0
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 5.0e-275 951.0 731 69.5
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 1.9e-274 949.1 727 69.2
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 1.9e-274 949.1 718 70.1
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 2.5e-274 948.7 722 69.7
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 6.7e-272 940.6 588 83.8
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 9.7e-271 936.8 727 69.2
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.2e-270 935.6 722 68.6
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 8.2e-270 933.7 719 68.0
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 5.3e-269 931.0 715 68.7
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 3.4e-268 928.3 718 70.2
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 3.4e-268 928.3 709 70.0
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 6.5e-267 924.1 713 69.3
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 2.1e-265 919.1 714 68.5
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 6.1e-265 917.5 725 69.1
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.3e-264 915.6 729 67.8
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.1e-263 913.3 718 68.5
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.1e-261 906.7 717 68.6
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.4e-261 905.6 716 68.4
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 3.1e-261 905.2 732 67.1
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 4.1e-261 904.8 716 68.4
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 7.0e-261 904.0 716 68.4
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.6e-260 902.9 716 68.3
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.0e-260 902.5 716 68.2
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 1.7e-259 899.4 713 67.6
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 2.2e-259 899.0 722 67.0
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.2e-257 893.3 717 66.7
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 2.6e-255 885.6 722 67.0
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 2.6e-255 885.6 705 67.5
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 9.7e-255 883.6 716 67.2
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 2.2e-254 882.5 723 65.3
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.8e-254 882.1 705 67.0
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 1.4e-253 879.8 722 66.1
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 4.1e-253 878.2 705 67.2
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 9.1e-253 877.1 715 67.4
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.9e-251 872.1 718 66.0
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.7e-249 865.5 718 65.9
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 5.2e-248 861.3 709 64.6
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 1.2e-244 850.1 729 63.0
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 3.5e-244 848.6 636 69.7
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 1.0e-243 847.0 529 82.6
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 2.9e-243 845.5 707 64.9
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 1.9e-242 842.8 735 63.3
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 6.1e-241 837.8 722 62.6
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 6.8e-240 834.3 720 63.5
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 1.3e-238 830.1 712 64.5
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 1.1e-237 827.0 940 52.6
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 1.6e-236 823.2 730 61.6
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 2.7e-236 822.4 593 72.8
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 1.0e-235 820.5 712 63.6
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 3.3e-234 815.5 721 60.2
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 1.6e-233 813.1 715 62.7
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 3.6e-233 812.0 715 62.7
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.6e-228 796.6 710 61.5
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 4.6e-228 795.0 720 60.6
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 3.0e-227 792.3 725 60.3
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 3.9e-227 792.0 925 51.5
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 5.0e-227 791.6 712 61.0
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 2.8e-225 785.8 722 59.7
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 4.7e-225 785.0 704 61.4
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 6.8e-224 781.2 716 60.1
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 1.2e-223 780.4 745 59.5
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 2.0e-223 779.6 720 60.0
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 4.4e-223 778.5 709 61.2
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 1.1e-221 773.9 723 58.6
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.6e-220 770.0 721 58.8
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 3.9e-219 765.4 720 59.4
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 5.6e-218 761.5 768 56.2
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 2.8e-217 759.2 719 58.0
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 3.6e-217 758.8 726 58.3
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 2.3e-216 756.1 727 58.5
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 3.5e-212 742.3 720 57.8
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 3.9e-211 738.8 720 57.5
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 8.6e-211 737.6 722 57.5
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 1.2e-209 733.8 715 58.9
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 8.1e-209 731.1 723 57.3
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 2.4e-208 729.6 726 56.6
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 2.6e-207 726.1 744 55.6
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 6.4e-206 721.5 547 69.8
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 1.1e-205 720.7 720 56.8
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 2.4e-200 703.0 726 53.4
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 1.2e-199 700.7 730 53.6
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 6.4e-198 694.9 623 61.6
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 1.9e-197 693.3 739 55.2
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.0e-195 687.6 619 61.4
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 2.6e-191 672.9 709 55.7
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 2.9e-190 669.5 577 64.0
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 6.5e-174 615.1 598 58.4
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 9.4e-165 584.7 592 55.6
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 1.0e-150 538.1 515 57.7
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 1.2e-132 478.0 785 40.0
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 3.0e-131 473.4 766 40.7
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 2.8e-121 440.3 462 57.1
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 2.3e-115 420.6 706 38.5
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 2.6e-98 364.0 291 66.0
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.3e-94 351.7 263 67.3
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.9e-89 334.0 447 48.3
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 5.4e-72 276.6 429 42.9
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 8.7e-70 269.2 306 53.9
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 3.1e-59 234.2 370 44.3
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 7.9e-55 219.5 182 63.7
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 3.0e-54 217.6 186 60.8
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 6.9e-51 206.5 285 46.7
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 2.0e-50 204.9 153 71.2
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 1.1e-40 172.6 156 55.8
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 1.4e-38 165.6 107 82.2
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 1.4e-38 165.6 126 69.0
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 9.7e-37 159.5 133 61.7
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 4.8e-36 157.1 97 79.4
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.5e-34 152.1 126 61.1
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 7.7e-34 149.8 144 60.4
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 5.5e-24 117.1 151 46.4
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 4.1e-19 100.9 107 49.5
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 5.2e-06 57.4 116 36.2
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 6.8e-06 57.0 128 33.6


User provided reference genes

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