Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 2.4e-237 825.1 416 100.0
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 4.8e-209 731.1 405 89.4
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.4e-184 649.8 407 81.3
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 9.7e-170 600.5 397 76.3
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 7.2e-165 584.3 386 78.5
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 8.0e-164 580.9 380 77.1
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 8.8e-163 577.4 396 74.0
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 5.7e-162 574.7 408 72.1
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 7.5e-162 574.3 407 72.7
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 2.8e-161 572.4 412 71.4
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 2.4e-160 569.3 383 73.9
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 2.7e-156 555.8 374 73.5
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 2.3e-155 552.7 398 70.1
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 2.3e-155 552.7 390 71.0
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.6e-154 549.3 371 72.8
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.7e-153 546.6 397 68.8
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.7e-153 546.6 403 69.0
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 4.9e-153 545.0 366 73.2
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 1.8e-152 543.1 463 62.6
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 2.4e-152 542.7 404 68.1
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 4.1e-152 542.0 371 71.2
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.4e-152 541.6 398 69.1
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 7.0e-152 541.2 364 72.3
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 7.0e-152 541.2 387 68.7
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 7.0e-152 541.2 387 68.7
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 7.0e-152 541.2 379 70.4
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 7.0e-152 541.2 403 68.5
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 1.2e-151 540.4 393 69.0
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.2e-151 540.4 398 68.8
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 4.5e-151 538.5 389 68.1
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 5.9e-151 538.1 404 68.1
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 7.7e-151 537.7 363 71.6
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 7.7e-151 537.7 363 72.5
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 5.0e-150 535.0 397 68.3
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 6.6e-150 534.6 365 71.8
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 6.6e-150 534.6 380 71.1
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 1.1e-149 533.9 402 68.2
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 2.5e-149 532.7 402 66.2
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 2.5e-149 532.7 356 75.3
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.3e-149 532.3 374 70.1
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 4.3e-149 531.9 412 66.3
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 5.6e-149 531.6 412 64.6
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 5.6e-149 531.6 381 70.6
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 9.5e-149 530.8 413 65.6
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 9.5e-149 530.8 388 68.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 9.5e-149 530.8 402 66.2
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.6e-148 530.0 401 66.1
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 3.6e-148 528.9 402 65.9
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.4e-147 526.9 384 67.7
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 4.0e-147 525.4 375 68.0
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 4.0e-147 525.4 373 67.6
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 5.2e-147 525.0 398 67.6
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 5.2e-147 525.0 368 68.8
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 5.2e-147 525.0 374 68.2
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 6.8e-147 524.6 406 66.7
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.5e-146 523.5 403 66.0
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.5e-146 523.5 372 69.9
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 1.5e-146 523.5 379 65.7
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 4.4e-146 521.9 405 65.7
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 4.4e-146 521.9 379 65.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 5.7e-146 521.5 357 71.4
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 9.8e-146 520.8 386 66.8
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.7e-145 518.8 369 69.1
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.9e-145 518.5 373 68.9
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 2.4e-144 516.2 372 68.3
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.0e-143 513.1 401 65.3
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.0e-143 513.1 382 66.0
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.0e-142 510.8 373 67.8
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.0e-142 510.8 370 65.7
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 6.6e-142 508.1 410 64.9
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 8.6e-142 507.7 396 64.6
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 1.9e-141 506.5 370 68.9
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 3.3e-141 505.8 408 63.2
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 4.3e-141 505.4 361 69.0
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.5e-141 504.2 377 67.6
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 2.1e-140 503.1 416 62.0
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 2.1e-140 503.1 375 66.7
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.1e-140 503.1 400 65.0
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 3.6e-140 502.3 369 66.4
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 3.6e-140 502.3 369 67.2
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 8.0e-140 501.1 377 64.7
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 8.9e-139 497.7 343 70.8
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 2.0e-138 496.5 358 69.0
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.4e-138 495.7 377 65.5
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.1e-136 488.8 366 67.8
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.1e-136 488.8 366 67.8
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.6e-135 486.9 374 66.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.0e-135 486.5 374 66.0
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.0e-135 486.5 364 68.1
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 9.5e-133 477.6 372 64.0
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 3.6e-132 475.7 388 61.9
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 4.7e-132 475.3 371 64.7
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.4e-131 473.8 366 66.9
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.6e-127 460.3 377 62.6
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 2.5e-125 453.0 366 62.8
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.8e-123 446.8 363 62.8
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 5.6e-117 425.2 364 61.0
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.4e-115 420.6 422 55.0
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.0e-114 416.8 385 57.7
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 5.8e-114 415.2 377 58.9
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.3e-113 414.1 379 56.5
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 2.9e-113 412.9 357 62.2
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.2e-112 409.5 388 55.2
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 2.7e-111 406.4 366 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 4.3e-109 399.1 380 55.3
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 5.6e-109 398.7 393 55.7
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.8e-107 393.7 369 55.8
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 8.4e-105 384.8 367 56.1
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 5.3e-99 365.5 379 50.7
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 9.3e-96 354.8 292 65.4
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 4.6e-95 352.4 314 59.2
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.8e-89 332.8 365 50.4
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.9e-87 325.1 223 69.1
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.3e-85 319.7 315 54.3
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 9.6e-85 318.2 260 60.4
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 2.9e-73 280.0 394 43.4
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.8e-73 279.6 175 76.6
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.8e-73 279.6 175 76.6
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 2.1e-63 247.3 377 41.6
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 6.3e-52 209.1 401 36.9
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 2.7e-50 203.8 167 58.7
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 6.3e-44 182.6 113 75.2
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-38 165.2 132 63.6
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 7.5e-37 159.1 398 32.7
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.4e-35 154.8 111 67.6
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 5.4e-35 152.9 84 84.5
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.5e-34 149.8 140 57.9
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.6e-29 134.0 383 32.1
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.4e-11 74.3 73 52.1
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.4e-11 74.3 73 52.1
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 7.8e-10 69.3 69 53.6
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 2.3e-09 67.8 311 24.4
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 8.6e-09 65.9 86 44.2
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 2.1e-07 61.2 108 39.8
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 2.1e-07 61.2 108 39.8
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 2.1e-07 61.2 108 39.8


User provided reference genes

Program Settings