Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 4.8e-102 374.4 177 100.0
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 9.1e-85 317.0 177 85.9
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 8.3e-78 293.9 183 84.7
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 1.6e-73 279.6 183 81.4
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 2.8e-57 225.7 184 64.1
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 1.8e-56 223.0 181 64.6
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.4e-53 213.4 187 63.1
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 9.2e-53 210.7 186 61.3
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 3.1e-40 169.1 174 53.4
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 8.7e-35 151.0 163 50.3
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 6.2e-33 144.8 161 51.6
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.4e-29 132.9 167 47.3
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 6.0e-28 128.3 172 45.3
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.9e-28 127.9 144 50.0
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.3e-27 127.1 165 46.7
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 2.3e-27 126.3 157 45.9
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 3.0e-27 125.9 164 47.0
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 6.7e-27 124.8 163 47.2
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 2.5e-26 122.9 173 45.1
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 5.6e-26 121.7 141 45.4
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 9.6e-26 120.9 173 44.5
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.7e-25 119.0 155 44.5
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.1e-25 117.9 182 46.7
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.1e-24 115.9 151 44.4
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 9.0e-24 114.4 160 41.9
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 1.5e-23 113.6 163 41.7
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.5e-23 113.6 172 44.2
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.4e-23 112.5 173 40.5
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.3e-22 110.5 171 44.4
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 1.7e-22 110.2 157 43.9
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 2.9e-22 109.4 175 41.1
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.8e-22 109.0 173 38.7
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.9e-22 108.6 173 39.3
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 6.5e-22 108.2 175 40.6
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.1e-21 107.5 159 40.9
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.9e-21 106.7 148 44.6
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.5e-21 106.3 160 41.2
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.5e-21 106.3 160 41.2
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-21 105.5 160 41.9
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 7.1e-21 104.8 121 46.3
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 4.6e-20 102.1 156 41.7
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.0e-19 100.9 164 38.4
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.8e-19 100.1 177 41.2
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 2.3e-19 99.8 162 38.9
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 8.7e-19 97.8 161 41.0
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.5e-18 97.1 175 36.0
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.9e-18 96.7 152 40.8
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 2.5e-18 96.3 161 37.3
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 7.4e-18 94.7 148 43.9
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.3e-17 94.0 105 45.7
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.3e-17 94.0 164 39.0
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 1.6e-17 93.6 142 41.5
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 2.8e-17 92.8 149 38.3
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.8e-17 92.0 174 40.8
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 4.8e-17 92.0 160 37.5
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.1e-16 90.9 149 38.3
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 1.8e-16 90.1 136 46.3
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.8e-16 90.1 124 41.9
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.8e-16 90.1 170 40.0
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.8e-16 90.1 144 40.3
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 2.4e-16 89.7 147 38.8
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 4.1e-16 89.0 148 40.5
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 6.9e-16 88.2 156 36.5
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.0e-16 87.8 149 42.3
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.5e-15 87.0 170 38.2
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 2.0e-15 86.7 134 43.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 2.6e-15 86.3 150 35.3
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.4e-15 85.9 149 40.9
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 4.5e-15 85.5 180 35.0
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.8e-15 85.1 149 43.0
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 7.6e-15 84.7 146 35.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.3e-14 84.0 155 37.4
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.3e-14 84.0 161 37.3
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.1e-13 80.9 133 40.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.4e-13 80.5 161 36.6
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-13 80.1 149 32.2
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 2.5e-13 79.7 135 38.5
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.2e-13 79.0 144 37.5
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 4.2e-13 79.0 160 35.0
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 4.2e-13 79.0 151 37.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 5.5e-13 78.6 148 36.5
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 9.3e-13 77.8 168 36.9
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.2e-12 77.4 149 30.9
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 1.6e-12 77.0 153 39.9
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.6e-12 77.0 158 35.4
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-12 77.0 150 31.3
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.6e-12 77.0 154 35.7
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 2.1e-12 76.6 132 39.4
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.1e-12 76.6 139 36.0
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 4.6e-12 75.5 142 38.7
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.1e-12 75.1 143 37.8
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.1e-12 75.1 165 35.8
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 5.1e-11 72.0 116 37.1
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.7e-11 71.6 160 35.0
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 8.7e-11 71.2 161 29.8
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 2.5e-10 69.7 142 34.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.5e-10 69.7 151 33.8
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 2.5e-10 69.7 144 33.3
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 3.3e-10 69.3 145 37.2
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 3.3e-10 69.3 144 34.0
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 4.3e-10 68.9 170 29.4
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 5.7e-10 68.6 142 38.0
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 5.7e-10 68.6 159 32.7
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 7.4e-10 68.2 164 32.3
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 9.7e-10 67.8 164 35.4
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 2.2e-09 66.6 139 34.5
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.8e-09 66.2 170 31.8
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 2.8e-09 66.2 169 30.2
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 4.8e-09 65.5 94 39.4
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 6.3e-09 65.1 142 32.4
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.3e-09 65.1 159 31.4
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 6.3e-09 65.1 133 33.1
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 8.2e-09 64.7 158 30.4
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.8e-08 63.5 142 31.7
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 3.1e-08 62.8 89 42.7
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.3e-08 62.0 138 31.2
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 6.9e-08 61.6 163 31.9
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 9.0e-08 61.2 105 36.2
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.2e-07 60.8 153 28.8
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 1.5e-07 60.5 148 35.8
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 1.5e-07 60.5 158 34.2
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.0e-07 60.1 124 35.5
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.0e-07 60.1 169 29.0
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 2.0e-07 60.1 153 32.0
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-07 59.7 138 31.2
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 2.6e-07 59.7 170 32.4
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 5.9e-07 58.5 92 39.1
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 5.9e-07 58.5 140 30.7
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.0e-06 57.8 150 35.3
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.7e-06 57.0 156 30.1
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.2e-06 56.6 161 29.8
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 2.2e-06 56.6 153 28.1
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 2.9e-06 56.2 80 47.5
MELO3C016838.2 Cucumis melo HOM05D029900 ORTHO05D005146 5.0e-06 55.5 145 30.3
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 6.5e-06 55.1 107 36.4
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 8.5e-06 54.7 109 36.7


User provided reference genes

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