Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.5e-144 516.2 251 100.0
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 7.8e-130 467.2 251 90.0
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 5.4e-123 444.5 253 86.2
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 4.3e-120 434.9 253 83.8
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 1.5e-117 426.4 251 83.3
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 8.9e-110 400.6 251 78.5
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 9.2e-107 390.6 251 78.1
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 6.6e-105 384.4 255 75.7
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 6.6e-105 384.4 250 73.6
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.8e-103 379.0 251 73.7
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.8e-101 371.3 253 73.5
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 3.2e-99 365.5 254 72.8
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.0e-97 360.5 263 66.5
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 8.7e-97 357.5 243 71.6
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 7.3e-96 354.4 248 68.5
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.1e-95 352.8 239 71.5
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 6.2e-95 351.3 197 81.2
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 2.4e-94 349.4 237 69.6
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 3.1e-94 349.0 260 67.3
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.1e-94 349.0 245 71.0
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 5.3e-94 348.2 206 78.6
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 6.9e-94 347.8 254 67.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 2.0e-93 346.3 252 69.4
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.6e-93 345.9 209 77.5
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 4.4e-93 345.1 249 68.3
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 5.8e-93 344.7 246 65.9
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 7.6e-93 344.4 248 67.3
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 9.9e-93 344.0 248 68.5
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.7e-92 343.2 252 68.3
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 2.9e-92 342.4 240 68.8
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 3.8e-92 342.0 244 69.3
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 4.9e-92 341.7 258 68.2
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 8.4e-92 340.9 197 79.2
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 8.4e-92 340.9 247 68.0
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 9.3e-91 337.4 248 67.7
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.2e-90 337.0 250 66.4
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-90 337.0 255 65.9
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.6e-90 336.7 199 77.9
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.6e-90 335.1 249 67.9
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-89 332.8 236 69.1
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 2.3e-89 332.8 242 65.7
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.9e-89 332.0 228 67.5
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 3.9e-89 332.0 197 76.1
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.6e-89 331.3 251 64.9
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.6e-89 331.3 247 67.6
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 8.7e-89 330.9 239 68.6
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.9e-88 329.7 258 62.4
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.3e-88 328.6 196 74.5
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 5.6e-88 328.2 242 66.1
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 7.3e-88 327.8 232 67.2
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 7.3e-88 327.8 255 64.7
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 9.6e-88 327.4 199 75.9
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.6e-87 326.6 250 65.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.8e-87 325.9 251 66.9
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.8e-87 325.9 202 75.2
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 4.8e-87 325.1 259 62.9
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 4.8e-87 325.1 249 63.9
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 6.2e-87 324.7 247 64.4
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 6.2e-87 324.7 251 63.7
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.2e-87 324.7 251 63.7
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.1e-87 324.3 202 74.8
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.1e-86 323.9 207 72.9
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.4e-86 322.8 206 72.3
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 2.4e-86 322.8 248 64.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.0e-86 322.0 202 74.3
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 4.0e-86 322.0 236 67.4
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.4e-85 318.9 247 63.2
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 7.6e-85 317.8 239 63.6
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.7e-84 316.6 210 71.9
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.2e-84 316.2 245 62.4
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.2e-84 316.2 210 71.0
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.2e-84 316.2 195 73.3
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 2.9e-84 315.8 238 66.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.9e-84 315.8 206 70.9
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 4.9e-84 315.1 209 71.8
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 6.4e-84 314.7 197 73.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 6.4e-84 314.7 193 76.2
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.1e-83 313.9 204 71.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.4e-83 312.8 251 63.3
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 2.7e-82 309.3 193 74.1
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 3.5e-82 308.9 191 73.3
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 3.5e-82 308.9 191 73.3
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 4.6e-82 308.5 196 73.0
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 6.0e-82 308.1 256 60.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 7.9e-82 307.8 191 73.3
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 7.9e-82 307.8 189 74.6
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.3e-81 307.0 197 73.1
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.3e-81 307.0 192 74.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.8e-81 306.6 242 61.2
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.0e-81 305.8 197 72.6
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.0e-81 305.8 191 72.8
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 5.1e-81 305.1 236 61.9
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 8.7e-81 304.3 256 59.4
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.1e-80 303.9 256 59.0
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-80 303.5 195 72.8
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.9e-80 303.1 192 74.0
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.9e-80 303.1 235 65.1
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 2.5e-80 302.8 191 71.7
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-79 300.1 182 77.5
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 4.0e-78 295.4 193 70.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.9e-78 294.7 160 85.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.0e-77 293.1 249 60.6
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 2.0e-77 293.1 213 65.3
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.0e-76 290.8 202 69.3
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 3.8e-76 288.9 197 71.1
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 8.4e-76 287.7 198 70.7
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 1.4e-75 287.0 158 82.3
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.9e-75 286.6 161 80.7
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 5.5e-75 285.0 263 58.9
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 5.5e-75 285.0 176 75.0
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.2e-74 283.9 167 75.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.0e-73 280.8 251 57.8
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 9.6e-72 274.2 188 69.7
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 1.1e-70 270.8 163 77.9
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 2.6e-69 266.2 198 62.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.0e-68 261.9 251 54.2
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 7.2e-67 258.1 265 52.1
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.5e-64 250.4 260 52.3
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.6e-63 246.9 247 55.1
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 8.5e-60 234.6 182 54.4
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 1.5e-56 223.8 139 76.3
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 5.5e-51 205.3 192 49.5
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 5.5e-51 205.3 193 56.5
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 3.6e-50 202.6 131 69.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.4e-48 195.7 164 65.2
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.2e-44 183.3 102 80.4
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.0e-44 182.2 103 78.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 4.1e-38 162.5 112 63.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.3e-36 157.5 155 56.1
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 4.2e-35 152.5 95 72.6
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 4.2e-35 152.5 92 73.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-29 134.0 101 64.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.5e-27 126.7 192 38.5
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.3e-23 114.4 159 39.0
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.4e-22 110.2 69 79.7
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.9e-20 103.2 151 44.4
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 5.0e-20 102.4 197 32.5
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 8.6e-20 101.7 185 33.0
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 2.5e-19 100.1 215 31.6
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 5.6e-19 99.0 216 28.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.6e-18 97.4 176 34.1
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.1e-18 95.5 53 83.0
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.7e-15 87.4 171 39.2
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 4.9e-15 85.9 136 33.1
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 6.4e-15 85.5 133 39.1
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.9e-11 73.9 131 36.6
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 2.1e-10 70.5 228 24.6
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.1e-10 70.5 84 45.2
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.4e-09 67.8 93 41.9
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.2e-08 64.7 84 41.7
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.5e-08 64.3 37 78.4
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.7e-07 60.8 110 33.6


User provided reference genes

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