Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.7e-145 519.2 250 100.0
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 3.7e-116 421.8 252 80.6
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 4.6e-114 414.8 251 81.7
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 9.5e-112 407.1 252 77.8
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.0e-110 403.7 251 78.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.3e-108 396.7 251 76.5
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 3.7e-100 368.6 249 73.1
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 2.1e-98 362.8 249 70.7
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.0e-97 360.5 254 72.0
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.3e-97 359.4 249 71.5
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.2e-95 351.3 252 71.4
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 2.6e-93 345.9 248 65.7
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.3e-92 343.6 247 71.3
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.7e-92 343.2 253 70.0
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.9e-92 342.4 227 70.9
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 8.4e-92 340.9 251 66.9
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 8.4e-92 340.9 253 67.6
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.1e-91 340.5 219 72.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.4e-91 340.1 199 78.9
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.2e-91 339.0 246 66.7
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 7.1e-91 337.8 238 70.6
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-91 337.8 244 69.3
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 7.1e-91 337.8 242 69.4
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 9.2e-91 337.4 195 79.0
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 1.2e-90 337.0 254 66.5
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.2e-90 337.0 246 66.3
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.1e-90 336.3 250 66.4
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 2.1e-90 336.3 247 66.4
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 2.1e-90 336.3 251 67.7
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 2.7e-90 335.9 199 77.9
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 3.5e-90 335.5 244 68.9
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-90 335.5 244 68.9
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 3.5e-90 335.5 248 68.1
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 6.0e-90 334.7 226 70.4
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.0e-90 334.7 246 65.9
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.0e-90 334.7 257 65.4
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.0e-89 334.0 245 66.1
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.7e-89 333.2 227 68.7
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.3e-89 332.8 195 80.5
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 2.3e-89 332.8 257 66.9
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.0e-89 332.4 201 77.6
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 3.0e-89 332.4 199 75.9
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 5.1e-89 331.6 192 77.6
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 6.6e-89 331.3 195 78.5
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.9e-88 329.7 246 65.9
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.9e-88 329.7 253 64.8
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 4.3e-88 328.6 245 66.1
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 5.6e-88 328.2 257 63.0
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 9.6e-88 327.4 245 64.9
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-87 326.6 259 62.9
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.6e-87 325.5 238 68.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.4e-86 323.6 243 64.6
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.4e-86 323.6 248 64.1
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.0e-86 322.0 228 71.1
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.0e-86 322.0 202 74.3
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 5.2e-86 321.6 253 63.6
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.9e-86 320.9 196 74.0
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 1.5e-85 320.1 242 65.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 4.4e-85 318.5 261 62.1
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 7.6e-85 317.8 191 77.0
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.3e-84 317.0 246 63.8
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.3e-84 317.0 195 74.4
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.7e-84 316.6 195 73.8
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.9e-84 315.8 204 75.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 2.9e-84 315.8 190 77.4
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 3.8e-84 315.5 188 77.7
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 4.9e-84 315.1 250 65.2
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.1e-83 313.9 244 62.7
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.4e-83 313.5 244 64.8
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 1.9e-83 313.2 199 72.4
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.9e-83 313.2 221 68.3
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 5.4e-83 311.6 228 65.8
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 5.4e-83 311.6 193 76.7
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 7.1e-83 311.2 259 60.2
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 7.1e-83 311.2 259 60.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 7.1e-83 311.2 254 61.4
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 7.1e-83 311.2 189 74.6
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 9.3e-83 310.8 195 72.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 2.1e-82 309.7 258 60.1
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.1e-82 309.7 252 61.1
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 3.5e-82 308.9 256 60.5
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 3.5e-82 308.9 232 64.7
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 4.6e-82 308.5 256 60.5
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 4.6e-82 308.5 195 72.3
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.6e-82 308.5 246 60.2
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.0e-81 307.4 258 59.7
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.3e-81 306.2 192 75.5
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 3.0e-81 305.8 242 65.7
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 3.0e-81 305.8 238 66.0
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 8.7e-81 304.3 192 75.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 8.7e-81 304.3 214 66.4
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 8.7e-81 304.3 203 70.0
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-80 303.5 187 74.3
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 1.5e-80 303.5 201 71.1
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.9e-80 303.1 193 72.5
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 9.6e-80 300.8 219 65.8
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 4.8e-79 298.5 186 74.2
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-78 296.6 183 78.1
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 3.4e-77 292.4 237 63.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.4e-75 287.0 244 59.0
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.9e-75 286.6 202 68.3
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.4e-75 286.2 250 58.0
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 7.1e-75 284.6 198 70.7
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.1e-75 284.6 160 82.5
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.2e-74 283.9 193 69.4
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-74 283.9 193 71.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.1e-74 283.1 249 59.0
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 2.1e-74 283.1 158 82.3
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 3.0e-73 279.3 244 58.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.5e-72 276.9 181 71.8
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 3.3e-72 275.8 248 56.9
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 2.8e-71 272.7 198 63.6
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 2.8e-71 272.7 167 72.5
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.8e-71 272.7 161 77.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.9e-70 268.1 197 64.0
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.4e-67 260.4 216 60.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.4e-67 259.6 209 64.1
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.5e-61 238.8 247 53.0
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 4.2e-59 232.3 249 53.0
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.1e-58 229.9 186 52.7
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 7.4e-56 221.5 140 76.4
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.2e-53 214.2 198 56.6
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.0e-52 211.1 131 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 3.2e-51 206.1 192 51.0
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.2e-47 191.4 151 66.9
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-42 177.6 103 76.7
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-41 174.1 102 75.5
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.3e-39 167.5 108 68.5
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.6e-34 150.6 92 75.0
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.7e-34 149.8 153 54.9
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-33 147.5 95 71.6
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-29 132.9 101 63.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.9e-29 132.1 192 40.1
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 3.3e-24 116.3 211 32.7
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.8e-23 113.2 238 30.3
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 8.2e-23 111.7 185 33.5
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 1.8e-22 110.5 195 31.8
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 5.3e-22 109.0 167 35.9
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 5.3e-22 109.0 189 33.9
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 9.1e-22 108.2 198 32.3
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 2.7e-21 106.7 211 32.2
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 1.0e-20 104.8 193 31.6
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.2e-20 103.6 189 32.3
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 8.5e-20 101.7 203 30.5
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 8.5e-20 101.7 189 31.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.5e-19 100.9 178 34.8
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.5e-19 100.1 151 43.7
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 6.1e-18 95.5 69 69.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 3.0e-17 93.2 53 83.0
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 4.4e-16 89.4 125 36.0
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 2.2e-15 87.0 133 39.1
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 4.8e-15 85.9 54 77.8
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 3.1e-14 83.2 207 29.0
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 4.5e-13 79.3 140 36.4
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 8.0e-10 68.6 42 69.0
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.0e-09 68.2 51 62.7
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 6.8e-09 65.5 112 35.7
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 6.8e-09 65.5 122 33.6
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.6e-08 63.5 37 78.4
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 4.4e-08 62.8 84 39.3
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 4.9e-07 59.3 110 31.8


User provided reference genes

Program Settings