Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 1.5e-53 212.6 112 100.0
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 5.9e-37 157.5 134 73.1
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 1.1e-35 153.3 132 72.0
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 6.5e-28 127.5 122 63.9
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 1.8e-25 119.4 127 63.0
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 1.8e-25 119.4 127 63.0
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 2.6e-24 115.5 109 63.3
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 1.1e-22 110.2 127 55.1
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 3.5e-21 105.1 127 54.3
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 7.7e-21 104.0 133 49.6
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 1.3e-20 103.2 103 64.1
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 1.9e-19 99.4 131 50.4
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 7.2e-19 97.4 131 49.6
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 7.2e-19 97.4 112 53.6
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 2.7e-18 95.5 126 52.4
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 8.0e-18 94.0 129 48.8
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 2.3e-17 92.4 129 48.1
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 3.0e-17 92.0 127 50.4
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 5.2e-17 91.3 107 53.3
Ca_22071_v3 Cicer arietinum L. HOM05D007324 ORTHO05D007884 6.7e-17 90.9 113 53.1
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 8.8e-17 90.5 143 46.2
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 1.2e-16 90.1 120 50.8
Lj4g0022663 Lotus japonicus HOM05D007324 ORTHO05D007884 2.6e-16 89.0 127 52.8
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 3.3e-16 88.6 111 53.2
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 3.3e-16 88.6 148 45.9
Cfa012419 Carpinus fangiana HOM05D007324 ORTHO05D007884 4.4e-16 88.2 115 49.6
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 5.7e-16 87.8 117 50.4
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 5.7e-16 87.8 137 46.7
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 7.5e-16 87.4 120 50.0
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 3.7e-15 85.1 113 48.7
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 3.7e-15 85.1 89 56.2
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 3.7e-15 85.1 89 56.2
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 4.8e-15 84.7 70 71.4
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 6.3e-15 84.3 107 48.6
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 5.3e-14 81.3 117 47.9
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 9.1e-14 80.5 86 55.8
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 3.5e-13 78.6 87 54.0
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 7.7e-13 77.4 129 45.7
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 1.3e-12 76.6 108 50.0
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 2.2e-12 75.9 96 47.9
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 2.2e-12 75.9 96 47.9
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 3.8e-12 75.1 112 48.2
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 8.5e-12 73.9 110 45.5
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 1.5e-11 73.2 71 57.7
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 1.9e-11 72.8 71 56.3
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 1.9e-11 72.8 71 56.3
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 3.2e-11 72.0 82 52.4
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 3.2e-11 72.0 87 54.0
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 1.2e-10 70.1 122 45.1
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 1.6e-10 69.7 95 51.6
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 2.1e-10 69.3 101 46.5
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 3.6e-10 68.6 70 55.7
FvH4_5g21820 Fragaria vesca HOM05D031477 ORTHO05D007884 4.7e-10 68.2 103 50.5
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 4.7e-10 68.2 87 50.6
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 8.0e-10 67.4 110 43.6
CANSAT21G2393 Cannabis sativa HOM05D007324 ORTHO05D007884 8.0e-10 67.4 134 40.3
CSS0050429 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 1.0e-09 67.0 107 44.9
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 1.0e-09 67.0 102 42.2
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.8e-09 66.2 87 50.6
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 1.8e-09 66.2 94 48.9
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 1.8e-09 66.2 120 40.8
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 3.0e-09 65.5 101 45.5
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 4.0e-09 65.1 95 46.3
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.0e-09 65.1 145 37.2
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.0e-09 65.1 87 49.4
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 5.2e-09 64.7 112 42.9
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 1.2e-08 63.5 98 45.9
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 2.6e-08 62.4 95 45.3
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.4e-08 61.6 87 47.1
Actinidia09218 Actinidia chinensis HOM05D007324 ORTHO05D007884 9.8e-08 60.5 109 44.0
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 1.3e-07 60.1 98 41.8
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 1.7e-07 59.7 98 44.9
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 3.7e-07 58.5 98 44.9
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 3.7e-07 58.5 98 44.9
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 4.8e-07 58.2 83 45.8
Peaxi162Scf00615g00021 Petunia axillaris HOM05D007324 ORTHO05D007884 1.1e-06 57.0 126 37.3
AT2G35300 Arabidopsis thaliana HOM05D011082 ORTHO05D007884 1.4e-06 56.6 106 38.7
Potri.001G143700 Populus trichocarpa HOM05D007324 ORTHO05D007884 1.4e-06 56.6 126 36.5
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 1.4e-06 56.6 52 65.4
DCAR_008279 Daucus carota HOM05D007324 ORTHO05D007884 3.1e-06 55.5 112 38.4
Hma1.2p1_0585F.1_g183650 Hydrangea macrophylla HOM05D007324 ORTHO05D007884 4.1e-06 55.1 78 48.7
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 4.1e-06 55.1 118 38.1
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 4.1e-06 55.1 118 38.1
EL10Ac5g12140 Beta vulgaris HOM05D028673 ORTHO05D031676 5.4e-06 54.7 87 44.8
Aqoxy3G02405 Aquilegia oxysepala HOM05D007324 ORTHO05D007884 7.0e-06 54.3 57 59.6


User provided reference genes

Program Settings