Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G221250 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 4.3e-56 221.1 111 100.0
Phvul.003G271300 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 1.1e-19 100.1 61 86.9
Glyma.09G196800 Glycine max HOM05D000190 ORTHO05D000113 3.5e-18 95.1 61 82.0
Glyma.16G111900 Glycine max HOM05D000190 ORTHO05D000113 1.3e-17 93.2 61 80.3
Glyma.02G189400 Glycine max HOM05D000190 ORTHO05D000113 3.9e-17 91.7 61 78.7
Lalb_Chr05g0229541 Lupinus albus HOM05D000190 ORTHO05D000113 3.7e-15 85.1 63 73.0
Glyma.11G087500 Glycine max HOM05D000190 ORTHO05D000113 2.6e-13 79.0 64 67.2
arahy.Tifrunner.gnm1.ann1.ZL8L46 Arachis hypogaea HOM05D000190 ORTHO05D000113 4.5e-13 78.2 59 62.7
arahy.Tifrunner.gnm1.ann1.FX71XI Arachis hypogaea HOM05D000190 ORTHO05D000113 2.2e-12 75.9 59 62.7
Glyma.01G157500 Glycine max HOM05D000190 ORTHO05D000113 2.9e-12 75.5 66 65.2
VMungo0251G1080 Vigna mungo HOM05D000190 ORTHO05D000113 3.8e-12 75.1 61 65.6
Ca_02842_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 2.5e-11 72.4 82 54.9
Ca_30082_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 2.5e-11 72.4 82 54.9
Lalb_Chr09g0324811 Lupinus albus HOM05D000190 ORTHO05D000113 2.5e-11 72.4 66 60.6
Phvul.002G117900 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 2.5e-11 72.4 65 61.5
TPR.G13727 Trifolium pratense HOM05D000190 ORTHO05D000113 2.5e-11 72.4 65 61.5
VMungo1215G3216 Vigna mungo HOM05D000190 ORTHO05D000113 3.2e-11 72.0 66 60.6
Lalb_Chr05g0214911 Lupinus albus HOM05D000190 ORTHO05D000113 7.2e-11 70.9 65 64.6
Lj2g0006442 Lotus japonicus HOM05D000190 ORTHO05D000113 1.6e-10 69.7 67 64.2
TAR188G0001 Trochodendron aralioides HOM05D000190 ORTHO05D000113 2.7e-10 68.9 62 53.2
Lj4g0007400 Lotus japonicus HOM05D000190 ORTHO05D000113 3.6e-10 68.6 42 78.6
Potri.005G099200 Populus trichocarpa HOM05D000190 ORTHO05D000113 4.6e-10 68.2 61 57.4
GSVIVG01013408001 Vitis vinifera HOM05D000190 ORTHO05D000113 7.9e-10 67.4 67 56.7
Sabra05G0081600 Salix brachista HOM05D000190 ORTHO05D000113 1.4e-09 66.6 62 53.2
TAR376G1180 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.4e-09 66.6 72 54.2
GSVIVG01022305001 Vitis vinifera HOM05D000190 ORTHO05D000113 1.4e-09 66.6 64 56.2
MELO3C007979.2 Cucumis melo HOM05D000190 ORTHO05D000113 1.8e-09 66.2 62 54.8
Sabra02G0004800 Salix brachista HOM05D000190 ORTHO05D000113 1.8e-09 66.2 109 38.5
CsaV3_6G047900 Cucumis sativus L. HOM05D000190 ORTHO05D000113 2.3e-09 65.9 62 54.8
Dinv05503 Davidia involucrata HOM05D000190 ORTHO05D000113 2.3e-09 65.9 71 50.7
Gohir.D07G178800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 2.3e-09 65.9 65 56.9
Gorai.001G200000 Gossypium raimondii HOM05D000190 ORTHO05D000113 2.3e-09 65.9 65 56.9
Medtr8g073130 Medicago truncatula HOM05D000190 ORTHO05D000113 3.0e-09 65.5 61 55.7
Sed0014268 Sechium edule HOM05D000190 ORTHO05D000113 3.9e-09 65.1 64 54.7
Sc03g0004070 Simmondsia chinensis HOM05D000190 ORTHO05D000113 3.9e-09 65.1 62 53.2
Ciclev10025242m.g Citrus clementina HOM05D000190 ORTHO05D000113 5.1e-09 64.7 65 53.8
SHI29473 Sapria himalayana HOM05D000190 ORTHO05D000113 5.1e-09 64.7 53 52.8
Psat2g015000 Pisum sativum HOM05D000190 ORTHO05D000113 6.7e-09 64.3 61 57.4
CANSAT01G2102 Cannabis sativa HOM05D000190 ORTHO05D000113 8.8e-09 63.9 63 57.1
ClCG01G020950 Citrullus lanatus HOM05D000190 ORTHO05D000113 8.8e-09 63.9 64 56.2
Cc10_g00370 Coffea canephora HOM05D000190 ORTHO05D000113 8.8e-09 63.9 62 53.2
Dinv40205 Davidia involucrata HOM05D000190 ORTHO05D000113 8.8e-09 63.9 64 53.1
Aa31LG8G14770 Aethionema arabicum HOM05D000190 ORTHO05D000113 1.1e-08 63.5 62 53.2
Psat0s674g0040 Pisum sativum HOM05D000190 ORTHO05D000113 1.1e-08 63.5 66 57.6
Atru.chr3.35 Acer truncatum HOM05D000190 ORTHO05D000113 1.5e-08 63.2 57 59.6
CSS0043836 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 1.5e-08 63.2 53 64.2
Gohir.A07G172100 Gossypium hirsutum HOM05D000190 ORTHO05D000113 1.5e-08 63.2 68 54.4
Medtr5g024700 Medicago truncatula HOM05D000190 ORTHO05D000113 1.5e-08 63.2 66 54.5
QL02p015433 Quercus lobata HOM05D000190 ORTHO05D000113 1.5e-08 63.2 62 53.2
Atru.chr3.31 Acer truncatum HOM05D000190 ORTHO05D000113 2.5e-08 62.4 57 57.9
Psat4g103600 Pisum sativum HOM05D000190 ORTHO05D000113 2.5e-08 62.4 61 55.7
TPR.G33774 Trifolium pratense HOM05D000190 ORTHO05D000113 2.5e-08 62.4 67 55.2
TAR628G0676 Trochodendron aralioides HOM05D000190 ORTHO05D000113 3.3e-08 62.0 72 50.0
CSS0002916 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 4.3e-08 61.6 62 54.8
Haze_22842 Corylus avellana HOM05D000190 ORTHO05D000113 4.3e-08 61.6 71 53.5
vmacro04419 Vaccinium macrocarpon HOM05D000190 ORTHO05D000113 4.3e-08 61.6 64 53.1
Migut.N02977 Erythranthe guttata HOM05D000190 ORTHO05D000113 5.7e-08 61.2 62 50.0
AL3G50400 Arabidopsis lyrata HOM05D000190 ORTHO05D000113 7.4e-08 60.8 61 54.1
AT2G17480 Arabidopsis thaliana HOM05D000190 ORTHO05D000113 7.4e-08 60.8 91 41.8
Nn6g31667 Nelumbo nucifera HOM05D000190 ORTHO05D000113 7.4e-08 60.8 68 48.5
PGR119G2357 Punica granatum HOM05D000190 ORTHO05D000113 7.4e-08 60.8 62 58.1
Sp3g30830 Schrenkiella parvula HOM05D000190 ORTHO05D000113 7.4e-08 60.8 73 50.7
Duzib147G0468 Durio zibethinus HOM05D000190 ORTHO05D000113 9.7e-08 60.5 62 53.2
Prupe.7G185400 Prunus persica HOM05D000190 ORTHO05D000113 9.7e-08 60.5 67 50.7
RcHm_v2.0_Chr2g0096921 Rosa chinensis HOM05D000190 ORTHO05D000113 1.3e-07 60.1 64 50.0
Nitab4.5_0006579g0090 Nicotiana tabacum HOM05D000190 ORTHO05D000113 1.7e-07 59.7 111 39.6
Hund19688 Selenicereus undatus HOM05D000190 ORTHO05D000113 1.7e-07 59.7 62 53.2
CDE05G0160 Ceratophyllum demersum HOM05D000190 ORTHO05D000113 2.2e-07 59.3 53 58.5
Rhsim07G0257100 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.8e-07 58.9 73 50.7
Lj4A239G41 Lonicera japonica HOM05D000190 ORTHO05D000113 4.8e-07 58.2 96 37.5
Sed0028017 Sechium edule HOM05D000190 ORTHO05D000113 4.8e-07 58.2 67 44.8
THA.LOC104807419 Tarenaya hassleriana HOM05D000190 ORTHO05D000113 4.8e-07 58.2 61 52.5
Thhalv10022612m.g Eutrema salsugineum HOM05D000190 ORTHO05D000113 6.3e-07 57.8 62 54.8
TWI39G0785 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 6.3e-07 57.8 62 51.6
CiPaw.07G000900 Carya illinoinensis HOM05D000190 ORTHO05D000113 8.2e-07 57.4 62 51.6
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 8.2e-07 57.4 74 36.5
CARHR107650 Cardamine hirsuta HOM05D000190 ORTHO05D000113 1.1e-06 57.0 61 55.7
Dinv31975 Davidia involucrata HOM05D001003 ORTHO05D002734 1.1e-06 57.0 69 46.4
FAN28G1039 Fragaria x ananassa HOM05D000190 ORTHO05D000113 1.1e-06 57.0 64 48.4
Manes.01G156800 Manihot esculenta HOM05D000190 ORTHO05D000113 1.1e-06 57.0 61 50.8
BcaB07g31728 Brassica carinata HOM05D000190 ORTHO05D000113 1.4e-06 56.6 69 49.3
C07p05810 Brassica napus HOM05D000190 ORTHO05D000113 1.4e-06 56.6 79 44.3
BolC7t40982H Brassica oleracea HOM05D000190 ORTHO05D000113 1.4e-06 56.6 79 44.3
Cfa014121 Carpinus fangiana HOM05D000190 ORTHO05D000113 1.4e-06 56.6 71 50.7
ECA246G4929 Erigeron canadensis HOM05D000190 ORTHO05D000113 1.4e-06 56.6 56 53.6
BcaC06g36274 Brassica carinata HOM05D000190 ORTHO05D000113 1.8e-06 56.2 79 45.6
CiPaw.08G076200 Carya illinoinensis HOM05D000190 ORTHO05D000113 1.8e-06 56.2 69 49.3
Lsat_1_v5_gn_3_69841 Lactuca sativa HOM05D000190 ORTHO05D000113 1.8e-06 56.2 58 56.9
Potri.007G064300 Populus trichocarpa HOM05D000190 ORTHO05D000113 1.8e-06 56.2 64 54.7
QL06p053264 Quercus lobata HOM05D000190 ORTHO05D000113 1.8e-06 56.2 63 49.2
Thecc.01G002900 Theobroma cacao HOM05D000190 ORTHO05D000113 1.8e-06 56.2 69 47.8
Aqoxy5G00976 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 2.4e-06 55.8 62 46.8
Prupe.5G007100 Prunus persica HOM05D000190 ORTHO05D000113 2.4e-06 55.8 41 58.5
SalBow7G3464 Salvia bowleyana HOM05D000190 ORTHO05D000113 2.4e-06 55.8 67 47.8
Solyc02g082430.4 Solanum lycopersicum HOM05D000190 ORTHO05D000113 2.4e-06 55.8 61 52.5
Sopen02g027090 Solanum pennellii HOM05D000190 ORTHO05D000113 2.4e-06 55.8 61 52.5
THA.LOC104819708 Tarenaya hassleriana HOM05D000190 ORTHO05D000113 2.4e-06 55.8 89 40.4
A07p03570 Brassica napus HOM05D000190 ORTHO05D000113 3.1e-06 55.5 79 43.0
BraA07t28146Z Brassica rapa HOM05D000190 ORTHO05D000113 3.1e-06 55.5 79 43.0
Carub.0003s3155 Capsella rubella HOM05D000190 ORTHO05D000113 3.1e-06 55.5 62 51.6
Lj4A810T52 Lonicera japonica HOM05D000190 ORTHO05D000113 3.1e-06 55.5 64 48.4
Nn5g27669 Nelumbo nucifera HOM05D000190 ORTHO05D000113 3.1e-06 55.5 71 47.9
Oeu035855.1 Olea europaea HOM05D000190 ORTHO05D000113 3.1e-06 55.5 66 47.0
vmacro20614 Vaccinium macrocarpon HOM05D000190 ORTHO05D000113 3.1e-06 55.5 64 48.4
CSS0040533 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 4.1e-06 55.1 70 44.3
CAN.G1238.32 Capsicum annuum HOM05D000190 ORTHO05D000113 4.1e-06 55.1 61 54.1
Cfa007102 Carpinus fangiana HOM05D000190 ORTHO05D000113 4.1e-06 55.1 62 50.0
Cfa015037 Carpinus fangiana HOM05D000190 ORTHO05D000113 4.1e-06 55.1 62 50.0
COL.COLO4_05301 Corchorus olitorius HOM05D000190 ORTHO05D000113 4.1e-06 55.1 33 78.8
COL.COLO4_22567 Corchorus olitorius HOM05D000190 ORTHO05D000113 4.1e-06 55.1 64 51.6
Lsat_1_v5_gn_8_113461 Lactuca sativa HOM05D000190 ORTHO05D000113 4.1e-06 55.1 53 52.8
A09p11380 Brassica napus HOM05D000190 ORTHO05D000113 5.3e-06 54.7 69 47.8
BraA09t36777Z Brassica rapa HOM05D000190 ORTHO05D000113 5.3e-06 54.7 69 47.8
Cc06_g00060 Coffea canephora HOM05D000190 ORTHO05D000113 5.3e-06 54.7 62 46.8
Haze_03634 Corylus avellana HOM05D000190 ORTHO05D000113 5.3e-06 54.7 62 50.0
HanXRQChr15g0489791 Helianthus annuus HOM05D000190 ORTHO05D000113 5.3e-06 54.7 53 54.7
Actinidia32990 Actinidia chinensis HOM05D000190 ORTHO05D000113 6.9e-06 54.3 61 54.1
EL10Ac1g01897 Beta vulgaris HOM05D000190 ORTHO05D000113 6.9e-06 54.3 66 45.5
DCAR_000977 Daucus carota HOM05D000190 ORTHO05D000113 6.9e-06 54.3 68 48.5
Eucgr.J02551 Eucalyptus grandis HOM05D000190 ORTHO05D000113 6.9e-06 54.3 33 75.8
FvH4_1g10150 Fragaria vesca HOM05D000190 ORTHO05D000113 6.9e-06 54.3 41 61.0
Hma1.2p1_0085F.1_g044480 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 6.9e-06 54.3 61 52.5
Nitab4.5_0006781g0010 Nicotiana tabacum HOM05D000190 ORTHO05D000113 6.9e-06 54.3 69 46.4
Rhsim10G0192200 Rhododendron simsii HOM05D000190 ORTHO05D000113 6.9e-06 54.3 69 43.5
SGA_v2.0_scaffold26G11214 Striga asiatica HOM05D000190 ORTHO05D000113 6.9e-06 54.3 54 48.1
CANSAT01G0039 Cannabis sativa HOM05D000190 ORTHO05D000113 9.1e-06 53.9 71 42.3
Nitab4.5_0000467g0110 Nicotiana tabacum HOM05D000190 ORTHO05D000113 9.1e-06 53.9 61 47.5
SalBow5G2654 Salvia bowleyana HOM05D000190 ORTHO05D000113 9.1e-06 53.9 62 50.0
unitig_0.g1223 Utricularia gibba HOM05D000190 ORTHO05D000113 9.1e-06 53.9 35 68.6


User provided reference genes

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