Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 8.9e-131 470.3 243 100.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 6.2e-124 447.6 243 94.7
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 4.3e-117 424.9 244 91.0
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.8e-116 422.2 245 90.2
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 9.9e-106 387.1 249 82.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.3e-105 386.7 249 81.1
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.7e-103 379.0 248 81.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.9e-101 372.9 248 77.4
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.8e-100 369.0 246 76.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 4.7e-100 368.2 247 76.1
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-99 367.1 246 76.8
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.4e-99 366.7 246 75.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-99 365.9 246 76.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 75.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.0e-99 365.2 248 75.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.9e-99 364.4 246 76.0
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.0e-98 362.8 244 79.1
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 7.6e-98 360.9 247 77.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.2e-97 359.4 245 75.9
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.4e-96 356.7 246 76.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 7.1e-96 354.4 248 75.4
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 9.3e-96 354.0 263 71.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.6e-95 353.2 244 76.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.1e-95 352.8 251 76.1
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.1e-95 352.8 244 75.8
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.1e-95 352.8 250 76.8
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.5e-95 352.1 247 73.3
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.5e-95 352.1 248 74.6
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.6e-95 351.7 245 75.5
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 6.0e-95 351.3 246 75.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 6.0e-95 351.3 249 76.3
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.0e-95 351.3 252 73.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.8e-95 350.9 246 72.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.7e-94 349.7 243 76.1
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.7e-94 349.7 249 75.5
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.3e-94 349.4 245 73.1
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.1e-94 348.2 245 73.9
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.7e-94 347.4 250 74.4
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-93 347.1 249 74.7
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-93 347.1 249 74.7
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.1e-93 347.1 245 73.9
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.9e-93 346.3 235 78.3
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-93 346.3 247 72.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.3e-93 345.5 246 74.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 4.3e-93 345.1 245 71.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 72.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 74.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 74.0
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 74.0
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 74.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 4.3e-93 345.1 247 73.3
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.3e-93 345.1 246 74.4
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 5.6e-93 344.7 241 75.1
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 7.3e-93 344.4 251 72.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 9.6e-93 344.0 246 73.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 9.6e-93 344.0 249 71.5
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.3e-92 343.6 248 74.6
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.6e-92 343.2 248 72.6
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.1e-92 342.8 245 74.3
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.8e-92 342.4 241 74.3
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-92 342.0 246 73.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 8.1e-92 340.9 247 73.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.1e-91 340.5 254 70.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.8e-91 339.7 245 72.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.0e-91 338.6 246 73.2
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 9.0e-91 337.4 246 72.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.0e-91 337.4 246 72.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.0e-90 336.3 246 71.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 5.8e-90 334.7 246 71.1
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.2e-89 332.8 246 71.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.9e-88 329.7 246 70.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 3.2e-88 328.9 257 69.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 5.4e-88 328.2 246 69.1
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.1e-88 327.8 246 72.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.7e-87 325.9 246 71.1
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 7.9e-87 324.3 216 75.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.0e-86 323.9 242 67.8
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 247 68.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.6e-85 318.2 243 67.1
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.6e-85 317.4 236 70.8
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.6e-85 317.4 236 70.8
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.1e-84 316.2 240 67.5
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.8e-84 315.8 249 66.7
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.8e-84 315.8 240 68.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 4.8e-84 315.1 245 66.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 6.2e-84 314.7 249 66.3
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 8.1e-84 314.3 312 58.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 8.1e-84 314.3 250 68.4
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.1e-83 313.9 255 65.1
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-83 313.2 249 65.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.8e-83 313.2 240 67.5
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.1e-83 312.4 242 66.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 3.1e-83 312.4 249 65.9
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 3.1e-83 312.4 243 70.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.1e-83 312.4 243 66.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.0e-83 312.0 255 66.7
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.3e-83 311.6 242 65.7
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 6.9e-83 311.2 257 67.7
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 5.8e-82 308.1 264 65.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 7.6e-82 307.8 245 66.1
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 9.9e-82 307.4 247 65.6
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 9.9e-82 307.4 257 66.9
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.9e-81 305.8 250 64.8
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.9e-81 305.1 231 72.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 8.4e-81 304.3 245 64.9
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.4e-81 304.3 235 69.4
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.4e-80 303.5 257 66.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.5e-80 302.8 212 73.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.2e-80 302.4 320 55.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.1e-79 299.7 223 72.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 4.6e-79 298.5 252 63.9
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.6e-79 298.5 150 100.0
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 7.9e-79 297.7 256 65.6
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.0e-78 295.8 245 64.1
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.9e-78 295.4 241 67.2
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 5.1e-78 295.0 249 64.7
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.7e-78 294.3 232 67.7
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 8.7e-78 294.3 251 62.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 8.7e-78 294.3 246 66.3
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.3e-77 292.0 204 73.0
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.3e-76 290.4 248 63.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.6e-76 290.0 256 62.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.7e-76 288.9 214 70.6
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 4.8e-76 288.5 245 63.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 4.8e-76 288.5 245 63.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 4.8e-76 288.5 245 63.3
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 8.2e-76 287.7 238 66.8
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.1e-75 287.3 244 63.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 6.9e-75 284.6 245 62.4
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.5e-74 283.5 239 64.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.5e-74 283.5 251 61.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.6e-74 281.2 246 60.2
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 9.3e-72 274.2 316 52.2
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.5e-69 266.9 247 59.1
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.6e-68 263.5 259 57.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-67 259.2 231 60.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 9.4e-64 247.7 238 60.5
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.6e-63 245.4 245 57.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.0e-62 244.2 250 54.4
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.5e-61 240.4 246 54.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.5e-61 239.6 147 78.2
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.1e-59 232.3 211 59.2
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.0e-58 229.9 136 81.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-57 226.5 166 68.7
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.2e-57 226.5 246 53.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-56 223.8 166 67.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 4.2e-48 195.7 113 84.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.2e-47 194.1 117 83.8
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.6e-45 186.4 192 56.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.4e-45 185.7 268 43.3
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 9.1e-43 177.9 286 41.6
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.8e-35 153.7 275 39.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 2.0e-34 150.2 130 66.2
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.7e-33 147.1 98 80.6
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.0e-29 133.7 267 37.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.8e-28 129.0 127 59.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.5e-24 116.7 95 62.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 7.2e-24 115.2 89 66.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.6e-23 114.0 73 76.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.8e-23 113.2 69 78.3
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-22 110.9 73 74.0
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.0e-22 109.4 91 56.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 4.3e-16 89.4 110 39.1
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.8e-15 86.7 120 50.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 4.7e-15 85.9 90 43.3
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.6e-13 80.1 109 48.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.7e-12 77.4 131 45.0
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.6e-10 70.9 81 50.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.5e-10 69.7 89 53.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 6.6e-09 65.5 160 33.1


User provided reference genes

Program Settings