Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.2e-79 298.9 150 100.0
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.2e-79 298.9 150 100.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 9.5e-75 283.5 150 93.3
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.8e-73 277.3 150 90.7
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 6.4e-71 270.8 150 90.0
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.9e-67 259.2 155 83.9
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.5e-67 258.8 147 83.7
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.2e-66 256.5 144 86.8
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.1e-66 255.8 148 84.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.1e-66 255.8 144 87.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 4.7e-66 254.6 150 81.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 6.2e-66 254.2 145 85.5
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 8.1e-66 253.8 150 80.7
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.1e-65 253.4 150 80.7
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.1e-65 253.4 148 80.4
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-65 253.1 150 81.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.4e-65 253.1 149 82.6
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.4e-65 253.1 154 83.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.1e-65 251.9 150 80.7
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 4.0e-65 251.5 148 79.7
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 8.9e-65 250.4 150 80.0
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.2e-64 250.0 149 82.6
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.0e-64 249.2 147 82.3
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.4e-64 248.4 150 78.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.7e-63 246.1 147 80.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.7e-63 246.1 147 80.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.7e-63 246.1 147 81.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.7e-63 246.1 146 81.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.7e-63 246.1 147 78.9
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.2e-63 245.7 150 80.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.9e-63 245.4 147 80.3
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 8.3e-63 243.8 144 79.9
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.4e-62 243.0 147 78.2
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.4e-62 243.0 144 81.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.9e-62 242.7 144 79.9
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.4e-62 242.3 144 80.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 2.4e-62 242.3 148 79.1
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.4e-62 242.3 147 78.9
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.2e-62 241.9 141 83.7
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.2e-62 241.9 150 79.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 4.1e-62 241.5 148 79.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 4.1e-62 241.5 146 82.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.4e-62 241.1 150 76.7
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.4e-62 241.1 146 80.1
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.1e-62 240.7 150 76.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 7.1e-62 240.7 147 81.6
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-61 239.6 147 78.2
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.6e-61 239.6 147 78.2
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.1e-61 239.2 147 79.6
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.5e-61 238.4 151 78.1
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.5e-61 238.4 150 77.3
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 4.6e-61 238.0 147 78.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.6e-61 238.0 144 79.9
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.0e-61 237.7 146 80.1
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.0e-61 237.7 146 80.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 7.8e-61 237.3 147 77.6
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.0e-60 236.9 147 77.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.3e-60 236.5 147 76.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.7e-60 236.1 150 76.0
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.7e-60 236.1 143 80.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.3e-60 235.7 141 80.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.0e-60 235.3 150 75.3
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 3.9e-60 235.0 135 83.7
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.9e-60 235.0 150 76.7
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.6e-60 234.2 147 77.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 8.6e-60 233.8 151 76.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.6e-60 233.8 151 76.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.6e-60 233.8 151 76.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.6e-60 233.8 151 76.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.6e-60 233.8 147 76.9
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.1e-59 233.4 168 69.6
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-59 233.4 151 76.2
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.9e-59 232.6 143 75.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.9e-59 232.6 147 76.2
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.5e-59 232.3 151 75.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.5e-59 232.3 145 79.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.3e-59 231.5 145 78.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.5e-59 230.3 147 74.8
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.5e-59 230.3 147 76.2
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 9.5e-59 230.3 136 81.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.1e-58 229.2 147 73.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.1e-58 229.2 147 79.6
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.1e-58 229.2 147 74.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-58 228.0 150 74.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.1e-57 226.9 155 75.5
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.8e-57 226.1 148 74.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.4e-57 225.7 151 73.5
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.8e-57 224.2 148 72.3
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.5e-56 223.0 133 80.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.5e-56 223.0 133 80.5
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.5e-56 223.0 133 80.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.4e-56 221.9 147 72.8
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 4.4e-56 221.5 150 70.0
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.3e-55 219.9 139 74.8
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-55 219.5 150 69.3
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-55 219.5 150 69.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-55 219.5 150 69.3
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.7e-55 219.5 150 69.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.7e-55 219.5 150 69.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 3.8e-55 218.4 142 75.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.8e-55 218.4 148 70.3
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 3.8e-55 218.4 156 69.2
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.4e-54 215.7 130 80.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.4e-54 215.7 139 72.7
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.4e-54 215.7 143 69.9
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.4e-54 215.7 133 78.2
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.4e-54 214.5 139 71.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.4e-54 214.5 147 70.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.4e-54 214.5 139 71.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.1e-54 214.2 148 73.0
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.2e-54 213.8 139 71.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.1e-53 212.6 148 70.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-53 212.6 148 70.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-53 212.6 148 70.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.1e-53 212.6 148 70.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.1e-53 212.6 148 70.3
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.1e-53 212.6 132 78.8
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.7e-53 212.2 150 68.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 4.6e-53 211.5 207 56.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 6.0e-53 211.1 153 69.9
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.0e-52 210.3 142 71.1
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.3e-52 209.9 131 80.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.7e-52 209.5 210 55.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 6.6e-52 207.6 147 68.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.6e-52 207.2 147 68.0
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.1e-51 206.8 131 75.6
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.5e-51 206.5 139 69.8
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-51 206.1 138 71.0
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.9e-51 206.1 146 67.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.5e-51 205.7 151 68.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.3e-51 205.3 138 73.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.3e-51 204.9 147 67.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.1e-50 202.6 147 67.3
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.1e-50 202.6 122 82.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.1e-49 200.3 133 72.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.1e-49 200.3 147 66.0
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.8e-49 199.5 147 67.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.0e-49 198.4 139 66.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 6.9e-49 197.6 129 73.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.6e-48 195.7 113 84.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 7.6e-48 194.1 117 83.8
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.3e-47 193.4 148 66.2
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.9e-47 191.4 125 75.2
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.9e-47 191.4 125 75.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-46 189.9 132 70.5
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.7e-44 183.0 134 68.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.9e-43 179.5 128 68.8
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.5e-43 179.1 147 61.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.1e-36 154.8 95 78.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 6.7e-36 154.5 149 55.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 9.6e-35 150.6 154 51.9
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.4e-32 142.1 133 51.9
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.3e-27 125.6 99 59.6
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.5e-24 116.7 95 62.1
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.7e-23 113.2 69 78.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.5e-22 109.4 91 56.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 2.6e-16 89.4 110 39.1
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.9e-15 85.9 90 43.3
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 9.7e-11 70.9 81 50.6
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.0e-08 63.2 129 36.4


User provided reference genes

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