Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.3e-69 266.2 126 100.0
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.2e-67 259.6 126 97.6
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.2e-67 259.6 126 97.6
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.6e-67 259.2 126 97.6
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 8.0e-67 256.9 126 96.0
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.2e-65 253.1 126 95.2
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 7.5e-65 250.4 126 93.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 9.8e-65 250.0 126 93.7
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 3.7e-64 248.1 126 92.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.4e-63 246.1 126 89.7
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.4e-63 245.4 125 91.2
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 3.1e-63 245.0 126 90.5
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 7.0e-63 243.8 126 90.5
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 90.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 89.7
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.2e-62 243.0 125 89.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.2e-62 243.0 125 89.6
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.2e-62 243.0 126 88.9
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.0e-62 242.3 125 89.6
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 88.9
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 88.1
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 88.1
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 87.3
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 88.9
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 5.9e-62 240.7 125 88.8
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 5.9e-62 240.7 127 89.8
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 88.1
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 7.7e-62 240.4 127 89.0
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 86.5
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 88.9
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 88.9
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 88.1
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 89.7
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 88.9
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 88.9
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 3.8e-61 238.0 124 88.7
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.1
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.0e-61 237.7 124 87.9
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 87.3
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 88.1
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 87.3
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 87.3
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 87.3
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 86.5
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.1e-60 236.5 126 86.5
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.1e-60 236.5 126 88.1
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 87.3
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.9e-60 235.7 125 86.4
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.5e-60 235.3 124 87.9
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.3e-60 235.0 125 86.4
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 4.2e-60 234.6 125 84.8
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 87.3
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 86.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 84.1
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 88.1
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 88.1
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 9.5e-60 233.4 127 86.6
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 85.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 85.7
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 86.5
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 86.5
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 84.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 86.5
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 85.7
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 4.7e-59 231.1 140 79.3
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 85.7
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 3.0e-58 228.4 127 86.6
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 85.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 86.5
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 83.3
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 6.8e-58 227.3 126 83.3
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 83.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 83.3
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 84.1
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 1.5e-57 226.1 126 82.5
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.5e-57 226.1 126 84.1
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 82.5
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 83.3
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 82.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 82.5
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 82.5
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 83.3
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 83.3
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 4.4e-57 224.6 126 83.3
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 83.3
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 5.7e-57 224.2 126 82.5
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 82.5
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 82.5
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 82.5
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 82.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 83.3
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 81.7
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 84.9
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 82.5
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 82.5
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 83.3
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 83.3
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 5.4e-55 217.6 126 79.4
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-54 215.7 127 81.1
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.0e-54 215.7 114 86.0
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 81.7
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.9e-53 211.8 124 79.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 7.3e-52 207.2 107 89.7
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.1e-51 205.7 126 77.8
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 3.6e-51 204.9 107 88.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.0e-50 203.4 126 73.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 74.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.9e-50 200.3 112 81.2
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.2e-49 199.9 107 86.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 3.4e-49 198.4 107 86.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 84.1
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 86.9
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 7.5e-49 197.2 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.7e-48 196.1 93 92.5
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 86.9
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.2e-48 195.7 107 85.0
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 2.2e-48 195.7 107 85.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.7e-48 194.9 107 82.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 4.9e-48 194.5 94 92.6
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.4e-47 193.0 126 69.8
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.2e-46 189.9 104 84.6
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 2.0e-46 189.1 94 88.3
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.7e-45 186.0 112 78.6
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 3.0e-45 185.3 112 78.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 6.6e-45 184.1 107 81.3
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 8.6e-45 183.7 112 77.7
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.5e-44 183.0 139 66.9
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.7e-40 169.5 121 64.5
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.1e-39 164.9 126 65.9
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.1e-39 164.9 124 65.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.0e-37 160.2 141 58.2
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 6.6e-37 157.5 112 62.5
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.1e-36 156.8 75 90.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 4.3e-36 154.8 126 64.3
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.4e-31 139.8 104 61.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.3e-29 133.3 79 78.5
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.3e-29 132.5 79 75.9
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.6e-29 131.0 75 81.3
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.6e-27 125.2 126 53.2
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.2e-27 124.4 66 86.4
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-26 123.6 87 69.0
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.4e-26 122.5 67 83.6
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.0e-25 119.4 87 65.5
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.8e-24 115.2 108 50.0
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 4.9e-24 114.8 89 67.4
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 1.9e-23 112.8 81 65.4
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 5.4e-23 111.3 75 66.7
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-19 100.1 97 53.6
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-18 96.3 72 65.3
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 5.3e-18 94.7 63 69.8
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 4.4e-17 91.7 79 54.4
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 3.8e-16 88.6 94 48.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.1e-14 82.8 43 83.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.2e-09 67.0 45 73.3
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.7e-08 63.2 38 84.2
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 2.4e-07 59.3 95 36.8


User provided reference genes

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