Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.1e-174 615.5 304 100.0
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.7e-158 561.6 304 91.4
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 5.7e-151 537.7 305 89.2
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.4e-149 533.1 305 87.5
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.8e-136 489.6 304 79.9
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 3.5e-132 475.3 318 77.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 3.8e-131 471.9 301 79.1
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 5.0e-131 471.5 306 78.4
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 8.5e-131 470.7 308 79.5
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 7.2e-130 467.6 304 78.0
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 8.3e-118 427.6 285 74.4
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.2e-116 423.7 274 75.9
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 3.5e-116 422.2 272 77.2
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 2.9e-115 419.1 278 75.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 5.0e-115 418.3 267 76.0
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 8.5e-115 417.5 267 76.4
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.1e-114 417.2 274 75.9
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 4.2e-114 415.2 279 75.6
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 7.2e-114 414.5 292 71.6
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 2.1e-113 412.9 271 74.9
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.1e-113 412.9 267 77.2
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.1e-113 412.9 275 73.5
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 8.0e-113 411.0 268 74.3
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 8.0e-113 411.0 278 75.2
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.4e-112 410.2 295 71.2
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.4e-112 410.2 295 71.2
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 3.0e-112 409.1 275 73.8
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.2e-111 407.1 269 73.6
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.2e-111 407.1 265 74.3
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.5e-111 406.8 276 72.5
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 1.5e-111 406.8 273 74.0
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.6e-111 406.0 281 71.9
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 2.6e-111 406.0 259 78.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 3.4e-111 405.6 274 73.4
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 4.4e-111 405.2 269 73.6
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 7.5e-111 404.4 269 72.9
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 9.8e-111 404.1 230 86.1
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.7e-110 403.3 282 72.3
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.8e-110 401.7 271 75.3
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 4.8e-110 401.7 266 73.3
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.3e-110 401.4 273 72.5
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 6.3e-110 401.4 286 72.7
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 6.3e-110 401.4 274 74.5
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.8e-109 399.8 279 72.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.8e-109 399.8 294 71.8
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 2.4e-109 399.4 272 73.9
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 5.4e-109 398.3 273 72.5
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 7.0e-109 397.9 286 68.5
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 7.0e-109 397.9 277 71.8
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 7.0e-109 397.9 273 71.8
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.2e-108 397.1 293 67.6
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.2e-108 397.1 273 71.1
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.7e-108 396.0 286 71.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.5e-108 395.6 274 73.4
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 3.5e-108 395.6 274 73.4
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.5e-108 395.6 275 73.1
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 7.7e-108 394.4 267 73.8
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.3e-107 393.7 299 66.9
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.9e-107 392.5 266 72.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 3.8e-107 392.1 264 73.5
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 5.0e-107 391.7 235 83.8
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 6.6e-107 391.3 286 69.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.5e-106 390.2 299 66.2
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.5e-106 390.2 327 63.9
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 1.6e-105 386.7 265 70.9
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.1e-105 386.3 291 69.1
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 6.1e-105 384.8 292 64.4
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.3e-104 382.9 274 69.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.0e-104 382.1 312 65.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.0e-104 382.1 276 69.2
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 5.2e-104 381.7 276 69.6
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 8.9e-104 380.9 269 67.7
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.0e-103 379.8 269 68.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 5.7e-103 378.3 268 69.4
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 7.5e-103 377.9 276 69.6
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.4e-101 373.6 266 71.1
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.4e-101 372.9 295 65.1
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.2e-101 372.5 292 65.1
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 5.4e-101 371.7 291 65.3
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.2e-101 370.9 267 70.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.2e-100 370.5 285 65.6
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.6e-100 370.2 230 79.6
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.0e-100 369.8 275 68.4
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.0e-100 369.8 275 68.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.7e-100 369.4 244 75.4
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.3e-99 367.1 301 64.5
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.1e-98 364.0 277 66.8
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 3.3e-98 362.5 231 77.5
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 5.6e-98 361.7 257 69.6
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 4.7e-97 358.6 264 67.4
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.0e-96 357.5 397 50.4
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 2.3e-96 356.3 321 58.3
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 3.1e-96 355.9 230 75.2
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 6.8e-96 354.8 282 66.3
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 3.4e-95 352.4 265 67.2
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-94 347.8 237 74.7
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.3e-91 339.7 261 66.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.7e-89 332.0 236 69.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.0e-83 314.3 251 61.4
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.1e-80 304.3 194 75.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 2.3e-80 303.1 250 59.2
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.2e-79 300.8 219 69.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 8.3e-78 294.7 250 58.0
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 4.3e-74 282.3 197 70.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.5e-71 273.9 201 65.7
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 4.9e-70 268.9 199 68.3
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.4e-69 267.3 171 78.9
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-66 257.3 155 80.6
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.3e-66 255.8 181 71.3
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-65 253.8 202 65.3
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.3e-62 244.2 178 69.7
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-62 244.2 171 68.4
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-55 220.3 172 68.0
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-54 216.9 172 66.9
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.4e-53 213.4 220 49.5
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.5e-52 209.5 129 79.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.3e-51 206.8 229 52.4
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-50 203.0 155 68.4
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-50 202.6 155 68.4
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-50 202.2 155 67.7
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-49 199.9 155 67.7
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.1e-49 198.4 157 66.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-48 196.8 172 62.2
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-48 195.7 155 66.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.9e-48 195.3 155 67.7
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 5.8e-47 192.2 165 63.0
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.1e-41 173.7 122 68.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-41 171.8 143 64.3
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-40 171.4 155 61.3
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-39 167.5 108 77.8
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-37 161.0 124 66.9
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-37 158.7 159 56.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-37 158.7 159 56.6
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-36 157.9 106 76.4
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-36 157.5 94 84.0
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-35 154.8 123 66.7
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.3e-35 154.5 98 77.6
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 3.9e-35 152.9 175 52.0
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 7.4e-34 148.7 99 74.7
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 5.5e-29 132.5 88 69.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-28 131.0 108 63.9
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-28 131.0 162 50.6
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 3.6e-28 129.8 227 37.9
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-25 118.6 133 51.9
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.4e-24 117.1 74 77.0
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-22 110.2 70 81.4
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-19 101.3 95 56.8
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-19 100.1 89 61.8
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 8.8e-19 98.6 57 78.9
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.4e-16 91.3 57 75.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.8e-11 74.3 111 41.4
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.3e-11 73.9 116 40.5
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 7.0e-08 62.4 43 65.1
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 9.1e-08 62.0 47 61.7
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 2.0e-07 60.8 35 74.3


User provided reference genes

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