Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 4.7e-110 401.4 224 100.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.2e-99 365.9 232 90.9
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.0e-92 342.8 233 88.8
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 4.6e-81 305.1 230 81.7
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.5e-79 299.3 237 77.2
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 8.3e-75 284.3 242 73.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.6e-73 280.0 203 79.3
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.3e-72 276.9 180 87.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.3e-72 276.9 234 76.9
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.7e-72 276.6 232 73.7
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.7e-72 276.6 217 76.5
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 5.0e-72 275.0 206 76.7
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 8.6e-72 274.2 223 74.4
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 8.6e-72 274.2 234 75.6
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 2.5e-71 272.7 180 80.6
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 5.6e-71 271.6 223 73.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 5.6e-71 271.6 182 85.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.1e-70 269.6 180 80.0
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 2.8e-70 269.2 236 71.6
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.1e-69 267.3 217 74.2
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.3e-69 266.2 217 73.7
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 3.1e-69 265.8 180 82.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.1e-69 265.8 180 82.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.1e-69 265.8 211 77.7
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.1e-69 265.8 211 77.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-68 263.8 180 82.2
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.5e-68 263.5 182 83.0
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.5e-68 263.5 236 68.2
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.4e-68 262.3 180 82.2
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 4.4e-68 261.9 182 81.3
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 5.8e-68 261.5 236 70.3
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 9.8e-68 260.8 236 67.8
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 4.9e-67 258.5 232 68.1
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 6.4e-67 258.1 233 70.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.1e-66 257.3 227 70.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.2e-66 255.8 168 84.5
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.4e-66 255.0 199 68.8
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 9.2e-66 254.2 227 62.6
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.6e-65 253.4 233 64.4
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.7e-65 252.7 231 66.2
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.5e-65 252.3 229 62.9
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 3.5e-65 252.3 263 64.6
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 4.6e-65 251.9 258 64.3
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 6.0e-65 251.5 178 79.2
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.7e-64 250.0 229 62.4
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.7e-64 250.0 223 68.2
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 6.6e-64 248.1 182 78.6
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 8.6e-64 247.7 234 67.1
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 8.6e-64 247.7 234 67.1
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 8.6e-64 247.7 180 77.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 2.5e-63 246.1 188 77.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.3e-63 245.4 182 78.0
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 5.6e-63 245.0 180 73.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 5.6e-63 245.0 180 73.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.2e-62 243.8 234 66.7
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.1e-62 243.0 178 75.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 4.7e-62 241.9 183 77.6
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 4.7e-62 241.9 226 65.5
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.2e-62 241.5 236 64.8
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.1e-61 240.7 214 68.7
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.1e-61 240.7 183 76.0
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.1e-61 240.7 185 76.8
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.4e-61 240.4 214 68.7
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.4e-61 240.4 229 65.1
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.4e-61 240.4 220 65.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.8e-61 240.0 173 79.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.1e-61 239.2 188 69.1
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 3.1e-61 239.2 175 70.9
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 3.1e-61 239.2 197 67.0
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 5.2e-61 238.4 184 74.5
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 6.8e-61 238.0 193 72.5
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-60 237.3 228 64.9
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-60 237.3 228 64.9
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.5e-60 236.9 216 61.6
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.5e-60 236.9 171 79.5
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 2.6e-60 236.1 181 75.1
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 3.4e-60 235.7 236 64.0
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.4e-60 235.3 221 64.3
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 5.8e-60 235.0 207 66.7
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 9.9e-60 234.2 226 58.4
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 9.9e-60 234.2 183 68.9
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.2e-59 233.0 182 68.7
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.9e-59 232.6 189 67.7
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 8.4e-59 231.1 184 67.4
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.4e-58 229.6 228 65.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.4e-58 229.6 151 85.4
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.2e-58 229.2 182 68.7
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 4.1e-58 228.8 228 59.6
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.2e-57 227.3 183 65.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.2e-57 227.3 184 66.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.6e-57 226.9 181 68.0
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.3e-56 223.0 182 73.6
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.1e-55 220.7 228 57.5
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.1e-54 216.5 223 64.6
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.1e-54 214.5 194 61.3
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 3.1e-53 212.6 244 55.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 5.2e-53 211.8 227 54.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 8.9e-53 211.1 239 53.6
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 7.6e-52 208.0 210 61.4
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.4e-50 203.8 186 67.2
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.1e-50 201.4 170 64.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.2e-49 200.7 126 80.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.5e-49 199.1 182 61.5
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.5e-47 193.7 219 54.8
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.5e-47 193.7 163 65.0
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 9.6e-47 191.0 327 48.9
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.6e-46 189.1 187 58.3
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.8e-46 188.7 180 65.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.5e-44 183.7 229 58.5
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 4.2e-42 175.6 188 53.2
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.6e-41 172.2 130 80.0
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 6.2e-38 161.8 140 60.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 5.8e-36 155.2 169 59.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.3e-32 144.1 173 50.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.3e-31 139.0 92 75.0
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.6e-31 137.9 92 72.8
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-29 134.4 92 71.7
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.8e-29 133.7 92 70.7
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 9.3e-26 121.3 151 49.0
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.6e-25 120.6 123 52.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 7.9e-25 118.2 153 49.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.7e-24 115.2 96 61.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 3.3e-23 112.8 99 56.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.3e-22 110.9 79 64.6
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.8e-22 109.8 72 73.6
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.4e-21 107.5 191 40.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.2e-20 104.4 188 38.3
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.6e-20 101.7 192 39.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.2e-19 100.1 250 32.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 2.9e-19 99.8 186 37.6
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 5.0e-19 99.0 186 37.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.4e-18 97.4 191 38.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.7e-16 88.2 65 70.8
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 6.3e-14 82.0 94 44.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.8e-11 72.8 144 38.9
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 4.2e-10 69.3 115 39.1
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 4.2e-10 69.3 54 88.9
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 6.7e-08 62.0 51 62.7


User provided reference genes

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