Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.1e-22 109.4 70 100.0
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 5.7e-22 107.1 70 97.1
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 4.8e-21 104.0 70 97.1
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 6.5e-18 93.6 70 88.6
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 8.5e-18 93.2 70 80.0
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 4.2e-17 90.9 70 71.4
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 4.2e-17 90.9 70 85.7
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 1.2e-16 89.4 68 69.1
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 2.1e-16 88.6 68 88.2
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 2.1e-16 88.6 70 85.7
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 6.7e-15 83.6 70 77.1
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 6.7e-15 83.6 68 67.6
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 8.8e-15 83.2 70 84.3
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 1.1e-14 82.8 73 65.8
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 5.7e-14 80.5 72 62.5
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 7.4e-14 80.1 75 60.0
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 7.4e-14 80.1 75 60.0
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 7.4e-14 80.1 75 60.0
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 1.3e-13 79.3 68 72.1
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 1.7e-13 79.0 72 62.5
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 2.2e-13 78.6 67 65.7
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 2.8e-13 78.2 64 73.4
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 4.8e-13 77.4 74 63.5
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 6.3e-13 77.0 68 63.2
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 6.3e-13 77.0 68 63.2
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 6.3e-13 77.0 68 63.2
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 2.4e-12 75.1 68 63.2
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 3.1e-12 74.7 67 76.1
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 7.0e-12 73.6 67 76.1
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 1.6e-11 72.4 67 56.7
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 1.6e-11 72.4 67 56.7
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.0e-11 72.0 39 89.7
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 2.6e-11 71.6 71 71.8
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 4.5e-11 70.9 68 55.9
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 5.9e-11 70.5 39 87.2
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 1.3e-10 69.3 39 84.6
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 1.3e-10 69.3 78 61.5
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 3.8e-10 67.8 70 55.7
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 3.8e-10 67.8 63 61.9
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 3.8e-10 67.8 67 70.1
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 5.0e-10 67.4 69 56.5
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 5.0e-10 67.4 71 56.3
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 6.5e-10 67.0 39 82.1
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 8.5e-10 66.6 39 82.1
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 8.5e-10 66.6 66 59.1
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 1.1e-09 66.2 67 61.2
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 1.1e-09 66.2 64 57.8
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 5.5e-09 63.9 67 59.7
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 7.2e-09 63.5 73 69.9
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 7.2e-09 63.5 69 56.5
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 9.4e-09 63.2 64 59.4
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 1.2e-08 62.8 72 68.1
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 1.6e-08 62.4 62 58.1
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 1.6e-08 62.4 38 81.6
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 2.7e-08 61.6 40 72.5
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 2.7e-08 61.6 70 51.4
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 3.6e-08 61.2 73 53.4
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 3.6e-08 61.2 70 54.3
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 4.7e-08 60.8 38 81.6
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 4.7e-08 60.8 70 55.7
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 4.7e-08 60.8 37 73.0
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 4.7e-08 60.8 67 67.2
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 6.1e-08 60.5 37 78.4
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 6.1e-08 60.5 63 55.6
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.0e-08 60.1 68 69.1
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 8.0e-08 60.1 68 69.1
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.0e-07 59.7 67 65.7
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 1.4e-07 59.3 67 52.2
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 1.4e-07 59.3 35 80.0
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 1.8e-07 58.9 68 48.5
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 1.8e-07 58.9 68 60.3
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 2.3e-07 58.5 61 59.0
unitig_22.g6269 Utricularia gibba HOM05D007996 ORTHO05D009821 2.3e-07 58.5 66 48.5
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 5.2e-07 57.4 68 48.5
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 5.2e-07 57.4 59 50.8
BcaC04g20800 Brassica carinata HOM05D013032 ORTHO05D009821 6.7e-07 57.0 68 47.1
A10p08350 Brassica napus HOM05D013032 ORTHO05D009821 6.7e-07 57.0 68 47.1
BolC9t56782H Brassica oleracea HOM05D013032 ORTHO05D009821 6.7e-07 57.0 68 47.1
BraSC37t46169Z Brassica rapa HOM05D013032 ORTHO05D009821 6.7e-07 57.0 68 47.1
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 6.7e-07 57.0 69 47.8
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 6.7e-07 57.0 67 47.8
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 8.8e-07 56.6 67 47.8
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 1.2e-06 56.2 68 45.6
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 3.3e-06 54.7 68 47.1
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 3.3e-06 54.7 37 67.6
Thhalv10015187m.g Eutrema salsugineum HOM05D013032 ORTHO05D009821 7.5e-06 53.5 68 45.6


User provided reference genes

Program Settings