Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 0.0e+00 1119.8 604 100.0
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 7.3e-283 976.9 589 87.1
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 8.1e-258 893.6 620 79.0
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.3e-207 726.9 621 70.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.7e-207 726.5 639 69.3
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.6e-205 718.8 633 66.7
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.6e-203 712.6 668 65.9
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.8e-196 689.9 611 68.4
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 6.7e-196 688.0 634 64.0
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.0e-188 664.1 616 63.8
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 4.9e-154 548.9 657 53.9
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 9.9e-147 524.6 388 75.8
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 8.6e-143 511.5 671 50.5
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 4.3e-142 509.2 646 50.2
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.6e-142 508.8 659 49.6
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 3.6e-141 506.1 624 51.3
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.6e-141 506.1 646 50.2
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 9.9e-139 498.0 658 49.1
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.4e-137 493.4 673 46.2
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.9e-135 486.1 652 49.8
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 1.1e-134 484.6 656 52.0
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.3e-134 483.0 650 52.6
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 2.1e-133 480.3 656 47.6
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.4e-132 477.6 648 51.1
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.4e-132 476.9 656 47.7
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.4e-132 476.9 653 49.0
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.3e-132 475.7 650 48.9
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 1.2e-131 474.6 559 52.2
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.4e-131 473.0 645 49.0
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.3e-127 461.1 664 47.0
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.7e-127 460.7 546 52.4
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.1e-126 458.0 655 47.3
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.3e-125 454.5 625 48.3
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 6.2e-125 452.2 653 47.5
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 9.0e-124 448.4 664 47.1
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 1.3e-122 444.5 570 49.5
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.2e-122 443.7 683 44.8
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.2e-122 443.7 683 44.8
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 2.4e-121 440.3 567 51.7
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 3.2e-121 439.9 620 45.8
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 7.1e-121 438.7 570 49.1
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 7.1e-121 438.7 550 51.6
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 1.3e-119 434.5 624 46.2
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 3.7e-117 426.4 630 44.0
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 4.8e-117 426.0 650 45.7
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 5.3e-116 422.5 651 44.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 5.8e-115 419.1 596 45.5
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.9e-114 416.8 711 40.6
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 6.4e-114 415.6 582 45.4
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 8.4e-114 415.2 623 43.8
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.3e-98 364.8 608 41.6
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 7.2e-97 359.0 434 51.8
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 4.6e-96 356.3 576 45.5
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 2.0e-94 350.9 438 48.6
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 4.3e-94 349.7 218 86.7
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 5.7e-94 349.4 428 49.5
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 2.1e-88 330.9 300 61.3
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 3.7e-85 320.1 543 40.3
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 4.5e-83 313.2 445 47.4
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.2e-72 278.5 545 39.6
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.1e-72 276.2 317 51.7
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 2.8e-69 267.3 596 36.7
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 1.4e-68 265.0 443 43.6
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.8e-68 264.6 532 39.1
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 2.4e-68 264.2 280 54.6
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.7e-66 258.1 275 55.3
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 4.2e-65 253.4 629 34.8
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.0e-55 220.3 234 50.9
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 7.5e-54 216.1 381 43.0
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 9.5e-49 199.1 226 46.9
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.2e-44 184.1 374 40.4
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.2e-38 165.6 215 48.8
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 2.2e-37 161.4 376 35.1
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 5.1e-34 150.2 159 47.8
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 4.7e-32 143.7 219 40.6
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 5.2e-31 140.2 457 33.0
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.3e-26 125.6 266 35.7
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 8.9e-23 112.8 138 53.6
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.6e-22 109.8 297 28.6
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.6e-22 109.8 297 28.6
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.9e-22 109.4 304 28.0
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 9.3e-20 102.8 193 35.8
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-19 102.1 289 27.7
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.1e-17 95.9 426 29.6
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-17 95.1 272 29.0
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 1.3e-16 92.4 120 50.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 4.4e-14 84.0 229 31.9
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.1e-12 79.3 292 27.4
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 1.2e-11 75.9 249 27.3
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.6e-11 75.5 249 27.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 3.0e-10 71.2 235 25.5
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 5.1e-10 70.5 243 25.9
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 5.1e-10 70.5 200 28.5
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.5e-09 68.9 215 27.0
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.9e-09 68.6 215 27.0
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.3e-09 67.8 215 27.0
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 3.3e-09 67.8 229 25.3
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 3.3e-09 67.8 267 22.1
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 7.3e-09 66.6 249 25.7
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 9.6e-09 66.2 215 25.6
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.3e-08 65.9 215 25.1
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.6e-08 65.5 243 24.7
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.6e-08 65.5 228 25.9
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 2.1e-08 65.1 200 25.0
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 2.1e-08 65.1 215 26.0
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 2.1e-08 65.1 215 26.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 2.8e-08 64.7 225 25.3
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 3.6e-08 64.3 213 22.5
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 3.6e-08 64.3 236 26.7
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 3.6e-08 64.3 368 22.6
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 4.8e-08 63.9 263 24.7
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.8e-08 63.9 127 33.1
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 4.8e-08 63.9 229 23.6
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 6.2e-08 63.5 216 24.5
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 8.1e-08 63.2 199 27.1
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.1e-07 62.8 249 24.9
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.1e-07 62.8 249 24.1
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.4e-07 62.4 215 25.6
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.8e-07 62.0 277 24.2
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.4e-07 61.6 282 25.5
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.4e-07 61.6 282 25.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 9.0e-07 59.7 261 24.1
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 9.0e-07 59.7 79 46.8
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 9.0e-07 59.7 261 23.0
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 9.0e-07 59.7 255 24.7
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.2e-06 59.3 241 25.3
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.5e-06 58.9 358 22.1
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.5e-06 58.9 215 24.2
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 2.0e-06 58.5 185 23.2
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.0e-06 58.5 249 25.3
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.4e-06 57.8 249 23.3
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.5e-06 57.4 101 43.6
arahy.Tifrunner.gnm1.ann1.FDP8U9 Arachis hypogaea HOM05D040116 ORTHO05D009646 7.6e-06 56.6 91 49.5
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 7.6e-06 56.6 261 23.0
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 7.6e-06 56.6 276 23.6
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 7.6e-06 56.6 269 23.8
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 9.9e-06 56.2 215 23.3
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 9.9e-06 56.2 239 22.2


User provided reference genes

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