Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 3.6e-73 278.1 134 100.0
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 1.2e-52 209.9 115 87.0
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 5.9e-44 181.0 120 77.5
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 1.1e-42 176.8 123 76.4
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 2.5e-34 149.1 127 66.9
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 1.2e-31 140.2 121 59.5
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 1.5e-31 139.8 119 63.9
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 2.9e-30 135.6 119 61.3
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 4.9e-30 134.8 113 58.4
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 6.4e-30 134.4 110 62.7
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 9.2e-29 130.6 107 64.5
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 6.0e-28 127.9 103 58.3
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 1.0e-27 127.1 97 61.9
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 2.3e-27 125.9 104 61.5
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.5e-26 123.2 105 57.1
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 9.5e-26 120.6 110 56.4
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 1.6e-25 119.8 102 59.8
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 2.1e-25 119.4 107 58.9
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 2.1e-25 119.4 110 56.4
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 2.8e-25 119.0 108 56.5
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 1.1e-24 117.1 104 54.8
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 1.4e-24 116.7 97 59.8
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 1.4e-24 116.7 106 55.7
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.8e-24 116.3 99 54.5
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.8e-24 116.3 100 58.0
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.8e-24 116.3 109 55.0
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 3.1e-24 115.5 95 60.0
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.1e-24 115.5 106 52.8
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.1e-24 115.5 106 52.8
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 3.1e-24 115.5 106 52.8
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 4.0e-24 115.2 114 53.5
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 4.0e-24 115.2 115 53.9
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 5.2e-24 114.8 105 58.1
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 5.2e-24 114.8 108 56.5
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 8.9e-24 114.0 130 41.5
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.2e-23 113.6 104 58.7
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 1.2e-23 113.6 93 59.1
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 1.5e-23 113.2 93 59.1
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 2.0e-23 112.8 95 52.6
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 2.0e-23 112.8 100 58.0
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 3.4e-23 112.1 102 56.9
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 5.8e-23 111.3 130 46.9
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 9.8e-23 110.5 109 54.1
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.3e-22 110.2 130 46.9
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 1.7e-22 109.8 95 56.8
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.7e-22 109.8 130 46.9
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 1.7e-22 109.8 99 53.5
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 2.2e-22 109.4 113 52.2
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 2.9e-22 109.0 98 54.1
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 4.9e-22 108.2 104 53.8
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 6.4e-22 107.8 101 57.4
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 6.4e-22 107.8 101 57.4
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 6.4e-22 107.8 103 54.4
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 6.4e-22 107.8 99 53.5
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.4e-21 106.7 130 46.2
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.9e-21 106.3 102 54.9
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 2.4e-21 105.9 118 48.3
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 3.2e-21 105.5 94 57.4
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 4.1e-21 105.1 113 49.6
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 4.1e-21 105.1 96 55.2
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 4.1e-21 105.1 100 53.0
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 5.4e-21 104.8 95 53.7
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 5.4e-21 104.8 119 43.7
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 9.2e-21 104.0 104 51.0
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 1.6e-20 103.2 101 51.5
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.6e-20 101.7 100 49.0
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 6.0e-20 101.3 101 50.5
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 1.0e-19 100.5 129 47.3
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 3.0e-19 99.0 94 47.9
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 3.0e-19 99.0 105 50.5
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 5.1e-19 98.2 108 48.1
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 6.6e-19 97.8 105 47.6
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 6.6e-19 97.8 101 51.5
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 6.6e-19 97.8 92 53.3
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 6.6e-19 97.8 99 52.5
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 1.5e-18 96.7 100 49.0
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 2.5e-18 95.9 100 48.0
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 5.6e-18 94.7 104 49.0
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 7.3e-18 94.4 104 49.0
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 1.6e-17 93.2 101 48.5
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 1.6e-17 93.2 110 44.5
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.8e-17 92.4 103 52.4
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 3.6e-17 92.0 92 51.1
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.3e-16 89.4 89 48.3
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 4.0e-16 88.6 76 55.3
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 8.9e-16 87.4 84 54.8
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.5e-15 86.7 75 57.3
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 4.9e-14 81.6 101 47.5
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 4.9e-14 81.6 101 47.5
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 6.4e-14 81.3 105 47.6
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 7.1e-13 77.8 97 44.3
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 7.1e-13 77.8 80 50.0
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 2.1e-12 76.3 86 48.8
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 3.5e-12 75.5 86 48.8
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 3.5e-12 75.5 88 46.6
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 3.5e-12 75.5 88 47.7
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 4.6e-12 75.1 88 46.6
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 4.6e-12 75.1 88 46.6
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 6.0e-12 74.7 85 51.8
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 1.7e-11 73.2 109 42.2
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 2.3e-11 72.8 107 41.1
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 6.6e-11 71.2 126 41.3
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 8.6e-11 70.9 85 47.1
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.5e-10 70.1 86 44.2
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 5.6e-10 68.2 87 44.8
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 5.6e-10 68.2 100 40.0
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 3.6e-09 65.5 87 42.5
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 6.2e-09 64.7 107 38.3
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 1.3e-06 57.0 91 39.6
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 8.4e-06 54.3 110 32.7
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 8.4e-06 54.3 87 39.1


User provided reference genes

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