Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 2906.3 1625 100.0
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 0.0e+00 2521.1 1634 86.5
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 2312.7 1623 81.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 2289.2 1642 77.0
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 1888.6 1641 64.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1786.5 1649 62.2
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 0.0e+00 1753.0 1647 62.7
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1659.8 1657 59.9
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1639.0 1663 59.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1441.4 1642 54.6
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1360.5 1643 53.0
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1309.7 1640 51.6
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1258.8 1640 50.5
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1161.7 1637 50.3
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1151.0 1667 49.0
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1134.8 1622 50.6
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1109.7 1641 47.3
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1075.1 1705 43.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 3.9e-307 1058.9 1659 45.1
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 5.3e-304 1048.5 1698 46.9
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-301 1040.4 1631 46.9
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 3.5e-300 1035.8 1640 44.6
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 2.7e-292 1009.6 1687 43.4
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.2e-287 994.2 1734 41.9
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.9e-284 981.5 1657 43.7
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 4.1e-280 969.1 1666 42.7
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 4.1e-280 969.1 1674 43.8
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.0e-279 966.8 1668 43.1
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.9e-275 952.6 1667 42.2
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 8.8e-275 951.4 1667 42.3
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.3e-273 947.6 1664 42.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 1.3e-273 947.6 1653 42.9
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 4.1e-272 942.6 1671 43.1
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 3.8e-270 936.0 1676 42.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 8.0e-268 928.3 763 72.2
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.5e-266 924.1 1653 42.6
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 9.1e-264 914.8 1663 41.9
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.5e-261 907.5 1639 41.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.7e-257 894.0 1662 41.3
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.4e-256 890.2 1674 41.0
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.1e-256 889.8 1680 41.2
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.7e-252 876.7 1656 39.0
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.4e-251 874.4 1709 40.7
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.4e-250 869.4 1503 45.0
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.3e-245 853.2 1671 40.3
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.2e-244 851.3 1667 39.1
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 3.6e-244 849.7 1681 40.7
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.8e-240 837.4 1681 39.6
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.2e-240 836.6 1677 40.0
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 2.3e-238 830.5 1677 40.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.9e-237 827.4 1675 39.2
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 6.2e-236 822.4 1462 42.0
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 6.8e-235 818.9 1661 39.1
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.7e-233 813.1 1680 39.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 7.8e-231 805.4 1675 38.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.8e-227 792.3 1698 39.2
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.7e-225 787.7 1666 38.9
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 2.1e-223 780.8 1666 38.7
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.9e-221 774.2 1671 38.3
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.5e-213 747.3 1435 39.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 3.6e-212 743.4 1653 38.4
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 7.6e-210 735.7 1673 39.6
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.1e-207 727.6 1663 37.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.9e-206 723.4 1673 36.9
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.9e-206 723.4 1660 37.3
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.1e-205 721.8 1667 36.8
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.9e-205 721.1 1660 36.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.2e-202 711.8 1648 37.9
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 4.9e-201 706.4 1667 36.1
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.2e-200 703.7 1658 37.9
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.1e-199 701.0 1682 36.3
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 6.0e-191 672.9 1657 36.3
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 7.4e-189 666.0 1683 36.1
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 9.6e-189 665.6 1724 35.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 3.1e-187 660.6 1658 37.8
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 7.6e-186 656.0 1681 38.3
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.3e-184 649.0 1653 34.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.7e-183 647.5 1696 36.6
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.3e-174 617.8 1660 35.1
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.0e-170 604.7 1341 35.6
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 7.7e-170 602.8 1654 34.7
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.1e-168 599.0 1703 34.2
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.2e-164 584.7 1235 37.2
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.9e-162 576.6 1675 33.7
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 7.7e-162 576.2 1673 33.8
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.8e-161 573.9 1654 34.2
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.8e-158 565.1 1635 33.7
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 7.7e-154 549.7 1793 32.7
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.0e-153 549.3 1667 32.8
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.9e-145 521.2 1687 32.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.1e-143 515.0 1669 31.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.1e-143 515.0 1397 34.1
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 9.8e-141 506.1 1653 31.7
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 5.4e-139 500.4 1668 31.4
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.0e-137 496.1 1661 31.5
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.5e-133 482.3 1778 32.0
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.8e-131 475.3 1654 31.0
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 3.3e-128 464.5 1781 31.2
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 9.5e-128 463.0 1488 32.1
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.6e-127 462.2 1663 30.4
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 4.0e-126 457.6 1653 31.7
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 8.9e-126 456.4 1681 31.5
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.4e-123 449.1 1312 32.6
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.9e-120 438.7 1666 31.3
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.9e-120 438.7 1667 31.3
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 2.5e-120 438.3 1661 31.5
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.5e-120 438.3 1254 35.5
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.3e-120 438.0 1660 31.5
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.0e-114 418.7 975 34.6
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.5e-109 402.5 1674 29.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.5e-109 402.5 1678 30.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 4.9e-108 397.5 709 40.9
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 9.2e-107 393.3 1598 28.9
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 9.2e-107 393.3 1638 28.5
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.1e-104 386.3 1661 29.4
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-104 386.0 1617 29.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 4.3e-104 384.4 1616 30.4
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.6e-98 365.9 1705 30.4
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.6e-97 360.5 1507 29.4
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.6e-95 354.8 1540 30.1
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.1e-90 339.0 1630 27.9
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 6.2e-87 327.4 1664 27.6
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 4.3e-80 304.7 1680 27.9
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.0e-73 282.0 690 37.7
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-71 276.2 336 50.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 9.0e-62 243.8 474 40.1
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.2e-47 194.1 451 35.0
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-46 193.4 212 57.5
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.1e-43 183.7 237 51.5
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 3.2e-43 182.2 1596 25.4
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 5.5e-43 181.4 675 29.6
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.9e-41 175.3 198 55.1
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 7.4e-40 171.0 207 51.7
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 4.8e-39 168.3 1710 23.6
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.4e-38 166.8 224 50.9
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.6e-37 162.5 1494 23.8
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.0e-33 150.6 1510 25.5
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.4e-33 150.2 369 35.8
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.5e-32 144.4 244 42.2
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.2e-29 137.1 1404 26.1
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.2e-27 128.6 1636 25.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.4e-27 127.5 1405 25.3
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 2.1e-26 126.3 180 53.3
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.0e-25 124.0 89 76.4
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.3e-25 122.9 210 43.3
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.6e-24 119.4 1501 24.3
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.0e-17 97.4 562 29.2
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.7e-16 91.7 150 42.0
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.3e-15 87.8 182 37.9
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 7.0e-14 84.7 61 72.1
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.0e-12 80.9 136 42.6
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-12 80.5 72 69.4
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 3.3e-11 75.9 498 28.3
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.0e-09 70.9 143 41.3
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 6.8e-09 68.2 443 34.8
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.2e-08 67.4 505 31.7
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.8e-08 65.1 489 27.2
Psat7g104280 Pisum sativum HOM05D001630 ORTHO05D002505 6.4e-07 61.6 106 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.1e-06 60.8 990 25.5
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.1e-06 58.9 227 30.8


User provided reference genes

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