Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.1e-106 389.0 200 100.0
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.7e-95 352.8 187 96.8
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 1.9e-94 349.4 204 88.2
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 6.5e-87 324.3 204 81.4
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 2.5e-86 322.4 205 82.4
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.6e-85 319.7 205 82.4
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.8e-84 316.2 203 81.3
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 4.3e-83 311.6 204 79.9
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 5.7e-83 311.2 199 79.4
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 5.7e-83 311.2 204 80.9
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 2.2e-82 309.3 202 80.2
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 3.7e-82 308.5 190 85.3
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 3.7e-82 308.5 193 81.3
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 8.2e-82 307.4 204 79.9
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 8.2e-82 307.4 204 79.9
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.1e-81 307.0 205 79.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.4e-81 306.6 205 77.6
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.8e-81 306.2 205 77.1
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 2.4e-81 305.8 200 80.5
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 3.1e-81 305.4 200 79.0
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.1e-81 305.1 200 76.5
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 4.1e-81 305.1 204 77.0
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.3e-81 304.7 200 76.5
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 6.9e-81 304.3 192 80.2
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 9.1e-81 303.9 183 84.7
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.2e-80 303.5 192 80.2
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.2e-80 303.5 196 79.1
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.5e-80 303.1 200 76.0
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.5e-80 303.1 200 76.0
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 1.5e-80 303.1 201 78.1
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 4.5e-80 301.6 201 78.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 5.9e-80 301.2 184 83.2
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 7.7e-80 300.8 200 75.5
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.3e-79 300.1 205 77.6
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.7e-79 299.7 193 79.3
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.7e-79 299.7 200 75.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 2.2e-79 299.3 204 75.5
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 2.9e-79 298.9 206 74.8
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 2.9e-79 298.9 182 82.4
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 6.5e-79 297.7 204 76.0
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 8.5e-79 297.4 205 75.6
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 1.1e-78 297.0 205 77.1
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 1.1e-78 297.0 206 74.3
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 1.4e-78 296.6 205 74.1
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.9e-78 296.2 204 77.9
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 2.5e-78 295.8 204 77.0
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 3.2e-78 295.4 203 73.4
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 3.2e-78 295.4 199 75.4
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 3.2e-78 295.4 199 75.4
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.2e-78 295.0 197 77.7
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.2e-78 295.0 204 75.5
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 5.5e-78 294.7 206 74.3
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 5.5e-78 294.7 205 75.6
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 9.4e-78 293.9 200 74.5
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.6e-77 293.1 204 75.5
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 4.6e-77 291.6 205 74.6
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 4.6e-77 291.6 204 75.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 6.1e-77 291.2 205 73.2
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.4e-76 290.0 193 75.6
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.4e-76 290.0 193 75.6
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 2.3e-76 289.3 209 73.2
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.3e-76 289.3 201 73.1
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 2.3e-76 289.3 199 74.9
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 3.0e-76 288.9 201 73.6
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 5.1e-76 288.1 202 73.3
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.7e-76 287.7 221 68.8
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 8.8e-76 287.3 202 73.3
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 8.8e-76 287.3 191 76.4
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 1.1e-75 287.0 202 72.8
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 1.1e-75 287.0 201 72.6
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 2.0e-75 286.2 190 78.4
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 2.6e-75 285.8 205 74.1
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 3.3e-75 285.4 186 80.1
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 4.4e-75 285.0 202 72.3
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 5.7e-75 284.6 193 75.1
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 7.4e-75 284.3 202 72.3
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 7.4e-75 284.3 202 72.3
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 7.4e-75 284.3 202 72.3
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 9.7e-75 283.9 203 71.9
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.3e-74 283.5 205 72.2
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 2.2e-74 282.7 196 74.0
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 8.2e-74 280.8 196 73.0
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.1e-73 280.4 188 75.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 1.8e-73 279.6 202 71.3
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 2.4e-73 279.3 205 70.7
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 5.3e-73 278.1 186 74.7
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 6.9e-73 277.7 225 67.1
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.7e-71 273.1 200 68.5
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.2e-70 268.9 204 70.6
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-70 268.9 240 61.7
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 9.4e-70 267.3 229 63.8
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 2.3e-68 262.7 205 66.3
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 3.9e-68 261.9 170 77.6
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 5.2e-68 261.5 197 70.1
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 6.7e-68 261.2 161 81.4
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 4.4e-67 258.5 198 68.7
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 1.3e-66 256.9 188 68.6
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.1e-65 253.8 315 48.9
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 1.6e-61 240.0 162 74.1
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.7e-58 229.9 200 63.0
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 7.7e-56 221.1 153 72.5
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.0e-52 210.7 132 78.8
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.0e-52 208.8 134 77.6
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 1.5e-51 206.8 118 88.1
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 2.0e-51 206.5 134 81.3
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 2.2e-50 203.0 116 88.8
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 5.0e-47 191.8 133 73.7
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.9e-46 189.9 108 88.9
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 4.2e-46 188.7 120 76.7
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 2.1e-45 186.4 106 85.8
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.6e-43 179.5 152 61.2
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-38 163.3 147 61.2
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 3.7e-34 149.1 185 46.5
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 6.4e-34 148.3 92 82.6
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.6e-32 143.7 175 44.6
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 1.3e-31 140.6 187 47.6
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-25 120.2 134 50.7
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 2.7e-24 116.3 138 44.9
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 7.8e-24 114.8 184 40.8
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.9e-22 110.2 231 34.6
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 1.2e-19 100.9 178 41.0
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.5e-11 73.9 48 77.1
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 1.5e-11 73.9 156 32.7
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 5.8e-11 72.0 78 48.7
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 3.5e-08 62.8 37 78.4
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 3.0e-07 59.7 36 75.0


User provided reference genes

Program Settings