Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.7e-132 474.2 264 100.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.4e-118 429.9 262 86.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.6e-117 424.9 262 85.1
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 8.0e-101 370.9 224 87.5
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.8e-97 359.8 265 72.8
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 2.4e-97 359.4 259 77.6
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.0e-96 356.3 266 71.8
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 3.5e-96 355.5 273 76.6
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.0e-95 354.0 235 77.4
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.3e-95 353.6 273 75.8
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 4.0e-92 342.0 233 79.4
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 9.8e-91 337.4 241 71.4
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 8.3e-90 334.3 250 69.2
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.8e-89 333.2 233 76.0
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.8e-89 333.2 233 76.0
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.8e-89 333.2 254 72.4
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 3.1e-89 332.4 219 82.6
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 5.4e-89 331.6 215 76.3
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 7.0e-89 331.3 213 82.6
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 2.0e-88 329.7 211 75.4
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 2.7e-88 329.3 225 72.9
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 4.5e-88 328.6 268 72.4
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 7.7e-88 327.8 209 85.2
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 7.7e-88 327.8 277 65.3
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.0e-87 327.4 246 69.1
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.7e-87 326.6 221 79.2
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.7e-87 326.6 209 84.7
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.7e-87 326.6 238 74.4
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.7e-87 326.6 238 74.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.7e-87 326.6 238 74.4
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 8.5e-87 324.3 273 68.5
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.5e-86 322.8 243 68.7
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 3.2e-86 322.4 210 83.8
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 4.2e-86 322.0 246 72.0
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 7.2e-86 321.2 213 75.6
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 7.2e-86 321.2 211 82.9
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 9.4e-86 320.9 235 76.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.6e-85 320.1 238 69.7
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.1e-85 319.7 230 78.3
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 2.1e-85 319.7 212 82.1
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.6e-85 318.9 228 76.8
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 4.7e-85 318.5 215 73.0
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 8.0e-85 317.8 210 82.9
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 8.0e-85 317.8 209 83.3
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.0e-84 317.4 221 71.9
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.4e-84 317.0 223 77.6
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.4e-84 317.0 215 80.5
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.8e-84 316.6 241 66.8
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.0e-84 315.8 265 66.0
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 4.0e-84 315.5 220 76.8
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 5.2e-84 315.1 232 76.3
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.8e-84 314.7 294 59.5
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 6.8e-84 314.7 243 72.4
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 8.8e-84 314.3 280 66.8
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.8e-84 314.3 280 66.8
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.5e-83 313.5 239 72.8
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.5e-83 313.5 254 67.3
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 3.4e-83 312.4 267 68.9
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 5.7e-83 311.6 236 75.0
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.5e-83 311.2 280 66.4
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 9.8e-83 310.8 233 68.2
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.3e-82 310.5 220 77.7
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.7e-82 310.1 236 74.6
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.7e-82 310.1 236 68.6
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.8e-82 309.3 222 77.0
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 4.9e-82 308.5 254 68.9
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 6.3e-82 308.1 248 72.2
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 3.1e-81 305.8 270 66.3
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.6e-80 303.5 244 68.4
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.0e-80 303.1 272 63.6
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 3.5e-80 302.4 254 60.2
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 7.7e-80 301.2 235 73.2
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 7.7e-80 301.2 214 70.1
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.0e-79 300.8 206 79.1
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.0e-79 300.8 215 74.4
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.0e-79 300.8 213 68.5
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.3e-79 300.4 258 67.8
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.9e-78 296.6 256 62.9
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.5e-78 296.2 196 72.4
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 1.8e-76 290.0 253 59.7
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.3e-76 289.7 269 63.6
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.2e-76 288.5 260 68.1
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.4e-75 285.4 209 69.4
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 5.7e-75 285.0 265 58.1
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-74 282.7 211 68.7
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.7e-74 282.3 236 61.0
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 6.4e-74 281.6 197 80.2
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.8e-73 280.0 214 71.5
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.8e-73 280.0 181 77.3
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 4.1e-73 278.9 211 69.2
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.4e-73 278.5 226 69.9
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 9.2e-73 277.7 241 61.8
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 7.8e-72 274.6 226 65.5
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.3e-71 273.9 236 60.6
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 1.5e-70 270.4 181 82.3
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 3.6e-69 265.8 211 62.6
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.4e-68 263.8 236 59.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 2.0e-67 260.0 213 62.0
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.6e-67 259.6 251 55.0
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.4e-65 253.1 187 65.8
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 3.2e-65 252.7 142 80.3
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 7.3e-62 241.5 177 81.9
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.1e-61 240.0 236 61.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 4.0e-52 209.1 221 57.9
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 5.2e-52 208.8 116 81.0
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.2e-48 197.6 176 69.9
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-42 176.4 156 60.3
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.6e-40 170.6 134 65.7
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.4e-33 147.5 139 64.7
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.5e-30 137.5 204 46.6
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.5e-30 136.7 176 42.0
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 7.4e-30 135.2 137 62.0
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.9e-26 122.5 179 43.0
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 7.1e-25 118.6 70 77.1
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.0e-23 114.8 119 57.1
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 7.4e-22 108.6 108 73.1
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 9.0e-20 101.7 105 56.2
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-18 96.7 77 63.6
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 3.8e-18 96.3 55 81.8
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.2e-17 92.8 133 37.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 7.1e-17 92.0 106 42.5
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.3e-15 87.0 75 65.3
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.1e-13 80.5 66 69.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.4e-12 77.0 139 35.3
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 9.0e-12 75.1 134 32.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.6e-11 73.6 147 34.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.3e-10 71.2 160 33.1
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.3e-10 71.2 137 30.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.2e-10 70.5 139 33.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.9e-10 70.1 139 32.4
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 8.5e-10 68.6 139 32.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.9e-09 67.4 137 32.1
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.2e-09 66.2 141 32.6
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 7.2e-09 65.5 138 31.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.2e-09 65.5 138 31.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 7.2e-09 65.5 137 29.9
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 9.3e-09 65.1 139 30.2
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.2e-08 64.7 140 35.0
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.6e-08 64.3 116 31.9
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.1e-08 63.9 138 31.9
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.1e-08 63.9 141 31.2
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.6e-08 63.2 105 35.2
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.6e-08 63.2 139 30.9
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.6e-08 63.2 139 30.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.6e-08 63.2 139 30.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.6e-08 62.8 141 31.9
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 6.1e-08 62.4 140 31.4
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 6.1e-08 62.4 139 32.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 6.1e-08 62.4 140 32.1
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.0e-07 61.6 139 30.2
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.0e-07 61.6 139 30.2
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.3e-07 61.2 139 30.2
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.3e-07 61.2 139 29.5
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 1.3e-07 61.2 60 56.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.8e-07 60.8 141 29.8
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.0e-07 60.1 119 35.3
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.9e-07 59.7 115 31.3
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 5.1e-07 59.3 101 36.6
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 8.7e-07 58.5 116 32.8
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.9e-06 57.4 116 32.8
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 3.3e-06 56.6 133 30.1
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.7e-06 55.8 116 31.0
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 5.7e-06 55.8 30 83.3


User provided reference genes

Program Settings