Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G195600 Phaseolus vulgaris HOM05D013104 ORTHO05D010857 1.9e-66 255.8 132 100.0
Glyma.17G094600 Glycine max HOM05D013104 ORTHO05D010857 3.4e-52 208.4 132 84.1
Glyma.05G032100 Glycine max HOM05D013104 ORTHO05D010857 3.8e-51 204.9 132 82.6
VMungo1215G2054 Vigna mungo HOM05D013104 ORTHO05D010857 1.1e-50 203.4 113 91.2
Lj4g0014795 Lotus japonicus HOM05D013104 ORTHO05D010857 3.9e-40 168.3 135 66.7
TPR.G38456 Trifolium pratense HOM05D013104 ORTHO05D010857 6.3e-38 161.0 138 66.7
Medtr4g107270 Medicago truncatula HOM05D013104 ORTHO05D010857 6.9e-37 157.5 133 66.2
Psat4g054920 Pisum sativum HOM05D013104 ORTHO05D010857 1.3e-35 153.3 136 64.7
Lalb_Chr12g0201261 Lupinus albus HOM05D013104 ORTHO05D010857 7.2e-26 120.9 136 54.4
arahy.Tifrunner.gnm1.ann1.ABZM2I Arachis hypogaea HOM05D013104 ORTHO05D010857 9.4e-26 120.6 153 51.6
Lalb_Chr07g0182451 Lupinus albus HOM05D013104 ORTHO05D010857 2.0e-23 112.8 135 51.1
arahy.Tifrunner.gnm1.ann1.984SQ9 Arachis hypogaea HOM05D013104 ORTHO05D010857 5.0e-19 98.2 139 48.2
CSS0015959 Camellia sinensis var. sinensis HOM05D009197 ORTHO05D010857 2.4e-13 79.3 125 39.2
Manes.14G072000 Manihot esculenta HOM05D009197 ORTHO05D010857 4.1e-13 78.6 125 40.8
Haze_07415 Corylus avellana HOM05D000207 ORTHO05D002370 3.5e-12 75.5 121 41.3
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 5.9e-12 74.7 127 39.4
Haze_07407 Corylus avellana HOM05D009197 ORTHO05D010857 2.9e-11 72.4 117 41.9
Potri.015G068800 Populus trichocarpa HOM05D009197 ORTHO05D010857 2.9e-11 72.4 123 40.7
Nitab4.5_0000758g0060 Nicotiana tabacum HOM05D009197 ORTHO05D010857 6.5e-11 71.2 128 39.1
Potri.012G073800 Populus trichocarpa HOM05D009197 ORTHO05D010857 8.5e-11 70.9 128 43.0
COL.COLO4_07631 Corchorus olitorius HOM05D009197 ORTHO05D010857 4.2e-10 68.6 121 38.8
Thecc.03G071400 Theobroma cacao HOM05D009197 ORTHO05D010857 4.2e-10 68.6 126 37.3
Cfa019040 Carpinus fangiana HOM05D009197 ORTHO05D010857 5.5e-10 68.2 126 38.9
Atru.chr9.2375 Acer truncatum HOM05D009197 ORTHO05D010857 6.1e-09 64.7 116 36.2
Sopen06g027530 Solanum pennellii HOM05D009197 ORTHO05D010857 6.1e-09 64.7 125 36.0
MELO3C002227.2 Cucumis melo HOM05D022550 ORTHO05D025091 8.0e-09 64.3 136 37.5
Nitab4.5_0000003g0200 Nicotiana tabacum HOM05D009197 ORTHO05D010857 1.0e-08 63.9 127 36.2
Solyc06g071220.1 Solanum lycopersicum HOM05D009197 ORTHO05D010857 1.0e-08 63.9 125 36.0
Dinv07989 Davidia involucrata HOM05D009197 ORTHO05D010857 1.8e-08 63.2 127 37.8
Sed0012922 Sechium edule HOM05D022550 ORTHO05D025091 1.8e-08 63.2 128 38.3
Gorai.007G034100 Gossypium raimondii HOM05D009197 ORTHO05D010857 2.3e-08 62.8 125 35.2
CSS0023152 Camellia sinensis var. sinensis HOM05D009197 ORTHO05D010857 3.0e-08 62.4 118 38.1
Sabra15G0093200 Salix brachista HOM05D009197 ORTHO05D010857 3.0e-08 62.4 126 35.7
ClCG01G014220 Citrullus lanatus HOM05D022550 ORTHO05D025091 4.0e-08 62.0 137 38.0
CAN.G628.60 Capsicum annuum HOM05D009197 ORTHO05D010857 6.7e-08 61.2 122 38.5
Gohir.A11G028000 Gossypium hirsutum HOM05D009197 ORTHO05D010857 6.7e-08 61.2 125 36.8
Gohir.D11G031200 Gossypium hirsutum HOM05D009197 ORTHO05D010857 6.7e-08 61.2 125 35.2
Peaxi162Scf00689g00559 Petunia axillaris HOM05D000207 ORTHO05D002370 6.7e-08 61.2 127 35.4
Sc04g0008740 Simmondsia chinensis HOM05D017674 ORTHO05D019531 6.7e-08 61.2 133 36.1
QL10p013987 Quercus lobata HOM05D009197 ORTHO05D010857 2.6e-07 59.3 117 34.2
CsaV3_1G008100 Cucumis sativus L. HOM05D022550 ORTHO05D025091 3.3e-07 58.9 132 34.8


User provided reference genes

Program Settings