Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G195300 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 5.2e-90 334.3 165 100.0
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 7.8e-62 240.7 157 79.6
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 4.3e-60 235.0 157 78.3
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 4.3e-60 235.0 144 83.3
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 4.1e-55 218.4 155 72.3
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 1.1e-44 183.7 158 62.7
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 4.3e-44 181.8 158 63.9
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 4.7e-43 178.3 156 61.5
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 4.7e-43 178.3 157 61.1
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 1.6e-38 163.3 158 57.0
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 1.1e-36 157.1 165 55.2
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 1.1e-36 157.1 165 55.2
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 6.4e-32 141.4 165 52.1
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 6.4e-32 141.4 161 54.0
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 8.4e-24 114.4 162 42.6
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 5.4e-23 111.7 153 46.4
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 7.9e-22 107.8 200 38.0
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 1.8e-21 106.7 155 41.3
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 2.3e-21 106.3 155 41.9
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 1.1e-20 104.0 159 39.0
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 1.9e-20 103.2 159 41.5
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 2.5e-20 102.8 166 43.4
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 1.6e-19 100.1 154 41.6
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 2.8e-19 99.4 154 40.3
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 6.2e-19 98.2 154 38.3
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 1.4e-18 97.1 73 64.4
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 5.3e-18 95.1 156 39.7
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 2.6e-17 92.8 151 41.7
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 3.4e-17 92.4 156 41.7
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 3.4e-17 92.4 157 40.8
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 5.8e-17 91.7 155 38.7
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 9.9e-17 90.9 70 61.4
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 1.3e-16 90.5 167 41.3
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 2.9e-16 89.4 150 40.7
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 8.4e-16 87.8 167 32.3
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 1.1e-15 87.4 154 35.1
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 1.4e-15 87.0 138 38.4
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 1.4e-15 87.0 161 40.4
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 1.9e-15 86.7 154 39.0
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 3.2e-15 85.9 153 39.2
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 2.1e-14 83.2 144 35.4
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 3.5e-14 82.4 157 37.6
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 3.5e-14 82.4 173 36.4
Sc21g0004320 Simmondsia chinensis HOM05D007438 ORTHO05D009395 3.5e-14 82.4 169 37.3
Haze_13451 Corylus avellana HOM05D007438 ORTHO05D009395 6.0e-14 81.6 123 43.9
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 1.8e-13 80.1 69 55.1
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 1.8e-13 80.1 69 55.1
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 1.8e-13 80.1 157 35.7
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 2.3e-13 79.7 72 55.6
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 2.3e-13 79.7 145 36.6
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 3.0e-13 79.3 69 55.1
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 3.0e-13 79.3 137 41.6
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 3.0e-13 79.3 140 37.1
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 1.1e-12 77.4 65 55.4
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 1.5e-12 77.0 65 55.4
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 2.5e-12 76.3 60 60.0
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 3.3e-12 75.9 139 36.7
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 3.3e-12 75.9 103 41.7
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 5.6e-12 75.1 65 55.4
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 7.4e-12 74.7 105 41.0
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 1.3e-11 73.9 68 51.5
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 1.3e-11 73.9 150 35.3
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 1.6e-11 73.6 65 53.8
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 1.6e-11 73.6 62 62.9
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 3.7e-11 72.4 168 29.2
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 3.7e-11 72.4 67 52.2
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 3.7e-11 72.4 145 39.3
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 4.8e-11 72.0 60 55.0
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 4.8e-11 72.0 161 36.0
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 6.2e-11 71.6 131 34.4
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 8.1e-11 71.2 130 36.2
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 8.1e-11 71.2 80 47.5
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 1.1e-10 70.9 113 39.8
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 1.4e-10 70.5 192 32.8
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 1.4e-10 70.5 146 37.0
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 1.4e-10 70.5 150 35.3
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 1.4e-10 70.5 65 52.3
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 1.8e-10 70.1 128 39.1
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 2.4e-10 69.7 59 55.9
HanXRQChr17g0565881 Helianthus annuus HOM05D007438 ORTHO05D009395 5.3e-10 68.6 79 44.3
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 6.9e-10 68.2 129 34.1
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 6.9e-10 68.2 106 39.6
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 9.0e-10 67.8 60 55.0
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 9.0e-10 67.8 60 55.0
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 2.0e-09 66.6 123 32.5
SalBow8G2019 Salvia bowleyana HOM05D007438 ORTHO05D009395 2.0e-09 66.6 106 37.7
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 1.0e-08 64.3 95 46.3
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 2.9e-08 62.8 62 54.8
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 2.9e-08 62.8 129 31.8
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 1.1e-07 60.8 69 43.5
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 1.4e-07 60.5 154 33.8


User provided reference genes

Program Settings