Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 5.8e-138 494.2 247 100.0
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 9.0e-123 443.7 247 90.3
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 5.3e-107 391.3 247 81.8
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 6.3e-84 314.7 253 68.0
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 2.8e-79 299.3 221 68.8
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 5.2e-78 295.0 222 67.6
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 7.5e-77 291.2 247 66.4
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 2.2e-76 289.7 249 62.7
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 3.5e-74 282.3 217 66.8
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 1.3e-73 280.4 185 72.4
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 6.6e-73 278.1 235 61.7
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.1e-72 277.3 188 70.7
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 2.5e-72 276.2 191 68.6
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 2.5e-72 276.2 185 71.9
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 5.6e-72 275.0 212 63.2
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 7.3e-72 274.6 179 72.6
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 7.3e-72 274.6 244 64.3
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 9.5e-72 274.2 187 69.5
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 1.2e-71 273.9 234 61.1
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.2e-71 273.9 233 61.4
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.6e-71 273.5 186 70.4
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 2.1e-71 273.1 177 71.8
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 2.1e-71 273.1 187 69.0
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 2.8e-71 272.7 187 70.1
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 8.0e-71 271.2 189 68.8
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 1.4e-70 270.4 189 68.8
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 4.0e-70 268.9 224 60.3
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 5.2e-70 268.5 182 69.2
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 6.8e-70 268.1 227 61.7
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 2.0e-69 266.5 250 56.4
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 2.6e-69 266.2 232 59.1
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 7.5e-69 264.6 191 66.0
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.9e-68 262.7 193 63.2
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 2.9e-68 262.7 187 67.9
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 1.1e-67 260.8 187 65.2
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 3.2e-67 259.2 185 66.5
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 7.0e-67 258.1 177 70.1
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 7.0e-67 258.1 196 61.2
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.2e-66 257.3 206 61.7
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 1.6e-66 256.9 200 62.0
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 2.0e-66 256.5 177 67.8
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 2.0e-66 256.5 182 68.7
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.0e-65 254.2 252 54.4
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.0e-65 254.2 207 60.4
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.0e-65 254.2 188 66.5
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.3e-65 253.8 238 55.9
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.3e-65 253.8 238 55.0
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.3e-65 253.8 179 66.5
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.7e-65 253.4 186 62.9
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.7e-65 253.4 206 60.7
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 1.7e-65 253.4 172 69.2
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 3.9e-65 252.3 245 55.5
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 3.9e-65 252.3 187 62.6
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 6.6e-65 251.5 177 67.2
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 6.6e-65 251.5 172 69.2
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 8.6e-65 251.1 177 68.4
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.1e-64 250.8 235 53.2
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 1.9e-64 250.0 172 68.6
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 2.5e-64 249.6 250 54.4
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 3.3e-64 249.2 190 64.7
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 7.3e-64 248.1 182 65.9
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 9.5e-64 247.7 187 61.0
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.6e-63 246.9 178 68.0
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 1.6e-63 246.9 234 54.7
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.1e-63 246.5 178 65.2
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.1e-63 246.5 188 62.2
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 2.1e-63 246.5 188 60.6
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 2.8e-63 246.1 183 65.0
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 6.2e-63 245.0 178 64.6
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 8.1e-63 244.6 189 62.4
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.1e-62 244.2 196 58.2
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.1e-62 244.2 231 55.0
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-62 243.8 188 62.2
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.4e-62 243.8 188 62.2
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.8e-62 243.4 188 60.1
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.8e-62 243.4 188 60.1
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.8e-62 243.4 188 62.8
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.3e-62 243.0 188 62.2
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 4.0e-62 242.3 188 62.8
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 6.8e-62 241.5 188 62.2
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 6.8e-62 241.5 181 61.9
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 8.9e-62 241.1 188 59.0
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 8.9e-62 241.1 178 63.5
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 2.0e-61 240.0 163 68.1
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 2.6e-61 239.6 237 52.3
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 3.4e-61 239.2 178 64.0
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 5.8e-61 238.4 167 67.1
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 7.5e-61 238.0 178 63.5
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 7.5e-61 238.0 178 64.0
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 3.7e-60 235.7 178 61.8
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 6.4e-60 235.0 178 61.8
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 8.3e-60 234.6 223 51.6
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-59 234.2 178 61.8
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.1e-59 234.2 178 61.8
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 4.1e-59 232.3 159 67.3
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 9.2e-59 231.1 213 55.9
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 2.7e-58 229.6 175 61.1
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 7.8e-58 228.0 176 60.2
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.0e-57 227.6 176 59.7
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.0e-57 227.6 167 61.7
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-57 227.3 174 60.9
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.7e-57 226.9 178 60.7
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 5.1e-57 225.3 178 60.7
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 5.1e-57 225.3 182 59.9
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 2.5e-56 223.0 208 60.1
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 2.3e-54 216.5 197 56.3
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 4.0e-54 215.7 144 71.5
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 3.7e-52 209.1 203 55.2
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 6.2e-47 191.8 131 71.0
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 2.4e-46 189.9 155 55.5
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 4.0e-46 189.1 138 63.8
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.2e-45 187.6 200 48.5
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.2e-45 187.6 139 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 9.9e-45 184.5 173 50.9
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 1.7e-44 183.7 151 60.9
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 1.9e-43 180.3 185 53.5
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 4.2e-43 179.1 128 70.3
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 7.1e-43 178.3 143 60.1
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 9.6e-40 167.9 128 62.5
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-38 164.1 128 59.4
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-38 164.1 128 59.4
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 3.2e-35 152.9 95 73.7
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 2.5e-32 143.3 104 63.5
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 5.6e-32 142.1 144 51.4
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 4.0e-30 136.0 82 76.8
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 4.6e-26 122.5 91 64.8
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 3.3e-24 116.3 138 52.2
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 4.5e-21 105.9 88 60.2
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 4.6e-18 95.9 119 44.5
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 1.1e-16 91.3 50 90.0
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 3.1e-14 83.2 152 30.3
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 3.5e-10 69.7 49 65.3
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 1.8e-09 67.4 129 27.1
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-06 57.8 37 64.9
Cfa005086 Carpinus fangiana HOM05D005796 ORTHO05D007054 3.1e-06 56.6 50 56.0


User provided reference genes

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