Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.3e-190 668.3 363 100.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.7e-133 479.9 362 77.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 6.8e-119 431.4 373 71.8
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 8.3e-117 424.5 400 67.2
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.0e-86 323.6 328 61.3
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.1e-84 317.8 385 57.4
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 5.6e-81 305.4 403 53.3
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 2.6e-78 296.6 381 55.9
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.7e-77 293.9 373 55.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.7e-75 286.6 368 54.3
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.0e-74 284.6 361 55.7
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 3.9e-74 282.7 368 53.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 5.1e-74 282.3 375 52.8
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.3e-72 277.7 373 52.8
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.6e-72 277.3 376 52.7
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.2e-72 276.9 363 51.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.7e-72 276.2 367 51.2
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 8.2e-72 275.0 391 50.9
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.4e-71 273.5 371 50.1
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.4e-71 273.5 363 51.5
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 4.1e-71 272.7 394 52.0
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 5.3e-71 272.3 346 55.5
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 6.5e-69 265.4 377 51.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.9e-68 263.8 365 48.5
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.5e-68 263.5 368 52.4
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 7.2e-68 261.9 362 51.7
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.6e-67 259.6 355 50.4
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.1e-67 258.8 365 49.3
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.4e-66 257.7 367 50.7
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 5.1e-66 255.8 357 52.1
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 8.8e-66 255.0 374 47.3
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 7.4e-65 251.9 370 50.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.7e-65 251.5 365 47.4
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.8e-64 250.0 324 52.5
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.7e-64 249.6 382 51.0
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.7e-64 249.6 368 47.0
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 4.1e-63 246.1 371 48.5
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.3e-63 245.7 310 55.5
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 5.9e-62 242.3 349 50.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.3e-61 241.1 369 48.0
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 2.9e-61 240.0 361 46.5
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 3.8e-61 239.6 355 49.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.8e-61 239.6 364 48.1
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.5e-60 236.9 364 46.2
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 7.2e-60 235.3 349 47.0
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.7e-59 233.4 365 47.4
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.1e-59 232.3 370 48.9
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.9e-59 231.9 375 48.0
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.0e-58 231.5 367 47.7
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 3.0e-58 229.9 364 46.4
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.4e-57 226.1 382 45.0
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.7e-56 223.0 368 47.0
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 4.8e-56 222.6 363 46.8
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 6.3e-56 222.2 368 45.7
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 8.2e-56 221.9 371 46.6
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.8e-55 220.7 368 45.9
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.4e-55 220.3 365 44.9
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.1e-55 219.9 365 44.9
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 5.3e-55 219.2 363 44.4
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.2e-54 218.0 367 48.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.6e-54 216.9 352 45.5
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.6e-54 216.9 370 46.5
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.9e-54 215.7 374 44.7
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.1e-52 211.5 366 44.3
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.1e-52 211.5 355 46.2
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.9e-52 210.7 331 46.2
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.5e-52 210.3 326 46.0
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.5e-52 210.3 293 50.5
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.2e-52 209.5 369 45.5
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.5e-52 209.1 364 45.6
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 7.2e-52 208.8 382 44.8
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.2e-52 208.8 368 44.6
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.2e-51 208.0 326 49.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.2e-51 208.0 363 44.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 2.1e-51 207.2 365 43.8
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.6e-51 206.5 347 46.1
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.7e-51 206.1 371 44.5
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.0e-50 204.9 376 44.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 2.3e-50 203.8 352 45.2
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.0e-50 203.4 357 45.1
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 5.2e-50 202.6 370 42.2
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 2.6e-49 200.3 380 46.8
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.3e-49 199.9 358 44.7
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.3e-48 198.0 375 43.5
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.2e-48 197.2 362 41.2
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.2e-48 197.2 369 44.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.2e-48 197.2 262 50.4
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 3.7e-48 196.4 365 41.1
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 1.8e-47 194.1 367 40.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.8e-47 194.1 338 45.3
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.8e-47 194.1 306 46.7
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.8e-47 194.1 366 42.3
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 7.0e-47 192.2 362 43.1
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 7.0e-47 192.2 373 42.4
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 2.0e-46 190.7 360 43.6
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 3.8e-45 186.4 362 43.9
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 5.0e-45 186.0 295 46.4
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-44 184.9 362 43.1
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.5e-44 184.5 366 41.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 4.7e-43 179.5 361 41.6
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 6.1e-43 179.1 229 51.1
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 8.0e-43 178.7 363 40.8
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.4e-42 177.9 371 41.2
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 3.0e-42 176.8 328 42.4
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.6e-41 173.7 367 40.3
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 3.3e-41 173.3 296 43.6
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.3e-40 171.4 328 43.0
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 8.3e-40 168.7 242 46.7
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 2.4e-39 167.2 366 38.0
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 4.5e-38 162.9 316 42.7
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.3e-37 161.4 366 39.9
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.5e-36 157.9 355 38.6
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.3e-34 150.6 377 37.7
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 4.0e-34 149.8 298 39.6
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 7.5e-33 145.6 371 35.0
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 3.7e-32 143.3 278 40.3
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 2.4e-31 140.6 424 35.1
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 7.0e-31 139.0 343 38.2
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 9.1e-31 138.7 308 38.3
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.6e-30 137.9 346 35.5
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.7e-30 137.1 344 38.7
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 3.5e-30 136.7 356 35.4
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 4.5e-30 136.3 407 32.7
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.3e-29 134.8 382 35.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.3e-29 134.8 382 35.6
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.3e-29 134.8 379 36.4
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 3.3e-28 130.2 378 34.7
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 1.2e-27 128.3 350 35.4
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.2e-27 128.3 225 42.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.1e-27 127.5 361 35.2
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 2.2e-24 117.5 356 34.0
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 6.6e-21 105.9 181 44.2
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.9e-13 80.1 365 26.6
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 4.0e-10 70.1 89 46.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 8.9e-10 68.9 112 39.3
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 8.9e-10 68.9 125 35.2
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.2e-09 68.6 105 40.0
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.5e-09 68.2 94 42.6
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.5e-09 68.2 178 30.9
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.5e-09 68.2 128 35.2
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.5e-09 68.2 89 46.1
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.5e-09 68.2 196 31.6
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 2.6e-09 67.4 77 44.2
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.6e-09 67.4 80 45.0
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 3.4e-09 67.0 109 41.3
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 4.4e-09 66.6 146 31.5
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.8e-09 66.2 146 31.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 5.8e-09 66.2 157 31.2
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 7.5e-09 65.9 87 43.7
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.3e-08 65.1 95 38.9
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.3e-08 65.1 142 34.5
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 2.9e-08 63.9 139 29.5
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 3.7e-08 63.5 74 45.9
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 3.7e-08 63.5 127 36.2
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 4.9e-08 63.2 139 30.9
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 6.4e-08 62.8 202 28.2
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 6.4e-08 62.8 109 37.6
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.4e-07 61.6 74 44.6
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.4e-07 61.6 202 26.2
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.4e-07 61.6 112 35.7
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.9e-07 61.2 68 45.6
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 3.2e-07 60.5 36 80.6
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 4.1e-07 60.1 120 35.8
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 5.4e-07 59.7 116 34.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 7.0e-07 59.3 74 40.5
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 9.2e-07 58.9 206 30.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 9.2e-07 58.9 130 33.1
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 9.2e-07 58.9 191 28.3
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.2e-06 58.5 180 27.2
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 1.2e-06 58.5 103 35.0
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 1.6e-06 58.2 157 29.3
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 2.1e-06 57.8 63 47.6
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.1e-06 57.8 135 32.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.7e-06 57.4 120 32.5
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 2.7e-06 57.4 76 39.5
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 3.5e-06 57.0 72 38.9
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 3.5e-06 57.0 173 30.1
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 3.5e-06 57.0 237 27.8


User provided reference genes

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