Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.8e-47 192.2 96 100.0
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.2e-40 168.7 96 89.6
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 1.4e-34 149.4 94 80.9
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 1.7e-29 132.5 95 73.7
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.3e-29 132.1 94 73.4
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 6.6e-29 130.6 96 76.0
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 3.3e-28 128.3 95 70.5
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 7.3e-28 127.1 95 70.5
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.1e-27 125.6 95 70.5
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.5e-25 119.4 94 62.8
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.4e-25 118.2 94 60.6
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 4.4e-25 117.9 94 62.8
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 7.5e-25 117.1 94 61.7
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 3.7e-24 114.8 97 69.1
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 3.2e-23 111.7 89 62.9
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.6e-22 109.4 88 61.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.6e-22 109.4 94 58.5
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.0e-21 106.7 95 58.9
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 3.0e-21 105.1 94 57.4
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.9e-21 104.8 94 58.5
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.9e-21 104.8 94 58.5
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 3.9e-21 104.8 92 58.7
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.9e-20 102.4 90 55.6
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 2.5e-20 102.1 83 67.5
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.3e-20 101.7 88 54.5
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.6e-20 100.9 88 54.5
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-19 99.8 92 53.3
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 2.1e-19 99.0 94 57.4
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.8e-18 95.9 83 61.4
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 2.6e-17 92.0 96 55.2
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 7.6e-17 90.5 95 50.5
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 9.9e-17 90.1 84 57.1
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 1.3e-16 89.7 84 51.2
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.3e-16 89.7 88 59.1
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.7e-16 88.2 90 53.3
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.4e-15 86.3 94 52.1
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.0e-13 80.1 94 42.6
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.3e-13 79.7 91 56.0
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.7e-13 79.3 94 42.6
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 3.0e-13 78.6 84 42.9
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.0e-13 78.6 97 47.4
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 5.1e-13 77.8 91 51.6
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 6.6e-13 77.4 86 50.0
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 1.5e-12 76.3 102 42.2
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 2.5e-12 75.5 93 40.9
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.3e-12 74.7 96 44.8
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.3e-12 74.7 91 51.6
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 9.6e-12 73.6 79 57.0
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 1.4e-10 69.7 97 45.4
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 4.0e-10 68.2 97 45.4
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 4.0e-10 68.2 86 47.7
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 6.8e-10 67.4 88 46.6
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 8.9e-10 67.0 90 41.1
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-09 66.6 89 43.8
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-09 66.6 89 43.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.5e-09 66.2 97 41.2
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.5e-09 66.2 96 42.7
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.0e-09 65.9 92 46.7
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.6e-09 65.5 92 43.5
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 3.4e-09 65.1 86 45.3
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.8e-09 64.3 90 42.2
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.8e-09 64.3 93 43.0
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 9.9e-09 63.5 104 43.3
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.7e-08 62.8 92 41.3
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.2e-08 62.4 92 41.3
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 4.9e-08 61.2 96 40.6
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 4.9e-08 61.2 100 43.0
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 4.9e-08 61.2 91 45.1
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.2e-07 58.5 96 39.6
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.2e-07 58.5 91 44.0
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 4.2e-07 58.2 94 38.3
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 5.4e-07 57.8 91 41.8
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 7.1e-07 57.4 96 38.5
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 7.1e-07 57.4 83 45.8
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.1e-07 57.4 99 40.4
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.3e-07 57.0 90 43.3
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.3e-07 57.0 90 43.3
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.3e-07 57.0 85 41.2
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-06 56.6 85 40.0
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 1.6e-06 56.2 87 40.2
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.1e-06 55.8 102 40.2
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.1e-06 55.8 85 40.0
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 2.1e-06 55.8 98 38.8
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 2.7e-06 55.5 95 37.9
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 4.6e-06 54.7 100 38.0
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 4.6e-06 54.7 84 39.3
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 6.0e-06 54.3 101 35.6
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.8e-06 53.9 99 39.4


User provided reference genes

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