Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 4.4e-46 187.6 93 100.0
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 2.0e-30 135.6 90 81.1
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 3.7e-29 131.3 90 81.1
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 2.1e-24 115.5 89 70.8
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 6.8e-23 110.5 91 69.2
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 5.8e-22 107.5 89 67.4
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 7.1e-20 100.5 90 60.0
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 1.7e-18 95.9 91 58.2
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 1.6e-16 89.4 88 53.4
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 2.1e-16 89.0 91 58.2
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 2.1e-16 89.0 91 54.9
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 3.6e-16 88.2 86 55.8
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 3.6e-16 88.2 91 56.0
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 8.9e-15 83.6 85 54.1
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 3.4e-14 81.6 86 52.3
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 3.4e-14 81.6 86 52.3
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 7.6e-14 80.5 86 52.3
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 7.6e-14 80.5 85 52.9
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 7.6e-14 80.5 86 52.3
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 3.8e-13 78.2 86 51.2
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 2.4e-12 75.5 90 52.2
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 7.1e-12 73.9 85 51.8
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 9.3e-12 73.6 88 50.0
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.6e-11 72.8 86 52.3
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.6e-11 72.8 86 52.3
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 2.7e-11 72.0 91 47.3
arahy.Tifrunner.gnm1.ann1.Y9A4XN Arachis hypogaea HOM05D007106 ORTHO05D007770 3.5e-11 71.6 87 50.6
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 4.6e-11 71.2 88 48.9
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 6.0e-11 70.9 86 50.0
Medtr4g108700 Medicago truncatula HOM05D007106 ORTHO05D007770 6.0e-11 70.9 62 64.5
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 1.0e-10 70.1 86 47.7
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 3.0e-10 68.6 88 46.6
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 3.0e-10 68.6 81 48.1
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 3.9e-10 68.2 85 48.2
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 3.9e-10 68.2 85 48.2
arahy.Tifrunner.gnm1.ann1.DL456K Arachis hypogaea HOM05D007106 ORTHO05D007770 5.1e-10 67.8 94 46.8
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 8.7e-10 67.0 85 48.2
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 8.7e-10 67.0 87 48.3
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 8.7e-10 67.0 87 48.3
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.1e-09 66.6 88 40.9
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.5e-09 66.2 85 44.7
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.5e-09 66.2 85 44.7
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 4.3e-09 64.7 93 46.2
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 7.3e-09 63.9 82 48.8
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 9.6e-09 63.5 86 43.0
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.3e-08 63.2 82 47.6
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.3e-08 63.2 82 47.6
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 1.3e-08 63.2 87 44.8
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 1.1e-07 60.1 88 42.0
Nn4g23194 Nelumbo nucifera HOM05D007106 ORTHO05D007770 2.4e-07 58.9 88 40.9
arahy.Tifrunner.gnm1.ann1.FXK9PR Arachis hypogaea HOM05D048006 ORTHO05D007770 3.1e-07 58.5 105 42.9
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 3.1e-07 58.5 86 47.7
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.2e-06 56.6 89 40.4
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.2e-06 56.6 88 40.9
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.5e-06 56.2 85 43.5
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.0e-06 55.8 86 45.3
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 2.6e-06 55.5 91 41.8
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 2.6e-06 55.5 83 41.0
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 3.4e-06 55.1 85 42.4
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 3.4e-06 55.1 88 46.6
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 4.4e-06 54.7 88 44.3
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 5.8e-06 54.3 85 40.0
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 7.6e-06 53.9 77 41.6
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 9.9e-06 53.5 95 42.1


User provided reference genes

Program Settings