Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 2.8e-166 588.6 304 100.0
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 4.2e-146 521.5 302 85.8
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.2e-119 433.7 302 71.2
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.2e-118 429.5 302 71.9
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 4.5e-116 421.8 302 70.9
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 4.0e-112 408.7 302 72.2
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 7.0e-109 397.9 302 68.2
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.5e-92 342.4 315 57.1
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.3e-91 339.7 302 58.6
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 2.3e-91 339.7 302 59.3
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 6.2e-89 331.6 309 57.0
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.1e-85 320.9 276 58.0
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.4e-85 320.5 275 59.3
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 1.2e-84 317.4 299 57.9
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 3.5e-84 315.8 312 55.1
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.3e-83 313.9 310 53.2
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 3.9e-83 312.4 304 54.3
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 5.1e-83 312.0 294 54.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 6.6e-83 311.6 294 55.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 2.5e-82 309.7 292 54.5
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.3e-82 309.3 294 54.4
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 5.6e-82 308.5 299 54.5
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 5.6e-82 308.5 292 54.1
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.2e-81 307.4 310 55.5
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.6e-81 307.0 280 57.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 4.7e-81 305.4 320 54.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.9e-80 301.2 306 54.2
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.4e-79 298.9 320 53.8
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.8e-79 298.5 169 84.0
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 9.9e-79 297.7 307 54.4
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 3.7e-78 295.8 305 55.1
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 8.3e-78 294.7 299 54.8
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 8.3e-78 294.7 293 52.6
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.1e-77 294.3 274 55.5
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.6e-76 290.4 275 54.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 2.1e-76 290.0 303 54.5
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 2.3e-75 286.6 310 52.3
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.5e-74 283.9 308 50.0
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 9.6e-74 281.2 297 51.9
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 9.6e-74 281.2 299 53.5
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 9.6e-74 281.2 275 50.2
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 8.1e-73 278.1 297 51.2
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.4e-72 276.6 299 52.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 4.0e-72 275.8 301 50.5
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 6.8e-72 275.0 297 49.5
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 4.4e-71 272.3 271 53.5
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 9.9e-71 271.2 306 48.7
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.7e-70 270.4 294 48.0
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.4e-70 268.1 289 49.8
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 8.4e-70 268.1 290 52.4
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 8.4e-70 268.1 295 48.8
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.1e-69 267.7 272 51.8
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.9e-69 266.9 298 49.0
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.9e-69 266.9 301 48.5
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.4e-69 266.5 275 54.5
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 3.2e-69 266.2 313 50.2
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.2e-69 265.8 292 51.0
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 7.1e-69 265.0 313 47.9
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 3.5e-68 262.7 271 50.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 6.0e-68 261.9 195 69.7
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 7.8e-68 261.5 298 47.3
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.3e-67 260.8 310 49.4
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 2.3e-67 260.0 275 50.5
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 3.0e-67 259.6 287 50.2
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 5.1e-67 258.8 272 47.8
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 6.6e-67 258.5 315 46.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 6.6e-67 258.5 369 45.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 8.7e-67 258.1 287 49.8
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.1e-66 257.7 276 51.8
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.5e-66 256.5 294 46.9
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.5e-66 256.5 313 46.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.5e-66 256.5 279 49.8
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.3e-66 255.0 280 46.8
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.3e-65 254.2 273 48.0
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.8e-65 253.1 298 46.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.1e-64 251.1 272 47.1
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.4e-64 250.8 296 45.3
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.4e-64 250.8 297 47.5
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.1e-64 249.6 279 51.3
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 7.6e-63 245.0 224 56.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 1.3e-62 244.2 312 45.2
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 4.9e-62 242.3 262 53.4
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 4.2e-61 239.2 297 48.1
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 5.4e-61 238.8 297 46.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 4.6e-60 235.7 266 45.9
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 6.0e-60 235.3 308 43.8
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.9e-60 235.0 306 45.1
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 3.9e-59 232.6 296 43.9
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 3.9e-59 232.6 309 43.4
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 6.6e-59 231.9 290 47.9
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.3e-58 229.2 255 48.2
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 5.6e-58 228.8 287 47.0
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 7.3e-58 228.4 263 46.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 2.8e-57 226.5 318 40.6
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.4e-54 215.3 291 44.7
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.2e-53 213.0 307 42.7
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.1e-52 210.3 266 43.2
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 3.5e-52 209.5 262 44.3
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 1.8e-51 207.2 222 50.0
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 3.0e-51 206.5 301 42.2
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 3.0e-51 206.5 282 44.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.7e-51 205.3 309 40.8
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 3.4e-47 193.0 105 91.4
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.2e-44 184.5 204 52.0
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.6e-44 184.1 246 44.3
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.0e-43 181.4 294 40.1
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 1.0e-38 164.9 90 84.4
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 4.2e-37 159.5 198 49.0
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 8.7e-35 151.8 160 53.1
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.3e-34 149.8 227 40.5
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 1.4e-32 144.4 92 75.0
VMungo1309G2642 Vigna mungo HOM05D005448 ORTHO05D006405 1.8e-27 127.5 83 75.9
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 3.0e-27 126.7 181 45.3
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.1e-26 124.8 272 32.4
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 2.4e-24 117.1 138 48.6
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.2e-23 114.8 128 46.9
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.5e-23 114.4 261 30.7
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.4e-21 107.8 210 34.3
VMungo1309G1229 Vigna mungo HOM05D000034 ORTHO05D000016 1.9e-21 107.5 66 77.3
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.2e-20 104.8 184 39.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-19 100.9 196 35.2
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-19 100.9 122 47.5
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.4e-16 91.3 132 43.2
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.1e-16 89.7 141 42.6
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 4.1e-16 89.7 167 34.7
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 4.1e-16 89.7 187 34.2
VMungo0331G0595 Vigna mungo HOM05D005448 ORTHO05D006405 7.0e-16 89.0 250 28.4
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 9.1e-16 88.6 221 30.3
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.6e-15 87.8 174 35.6
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-15 87.8 63 69.8
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 2.6e-15 87.0 208 32.7
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.5e-13 81.3 88 47.7
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.5e-13 79.3 179 31.8
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.5e-13 79.3 179 31.8
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 9.4e-13 78.6 59 55.9
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 3.3e-10 70.1 67 47.8
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.7e-10 69.3 63 55.6
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.7e-10 69.3 63 55.6
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.7e-07 58.9 152 33.6


User provided reference genes

Program Settings