Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.1e-268 927.9 485 100.0
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 3.3e-193 678.7 510 75.3
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 3.8e-141 505.8 527 57.3
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 2.7e-139 499.6 527 56.5
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 7.9e-139 498.0 521 58.5
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.4e-138 497.3 516 56.6
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 3.3e-129 466.1 494 58.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 6.5e-125 451.8 490 56.9
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 1.5e-124 450.7 503 58.1
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 4.2e-124 449.1 500 58.4
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 8.2e-120 434.9 519 51.1
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.6e-118 430.6 519 50.7
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 2.7e-118 429.9 514 51.9
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 4.4e-113 412.5 543 48.8
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.4e-111 407.5 486 54.7
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.3e-109 401.0 254 82.7
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 3.8e-109 399.4 515 49.5
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 3.3e-108 396.4 495 50.9
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 6.6e-101 372.1 482 51.9
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 2.2e-96 357.1 246 78.0
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 4.9e-96 355.9 530 48.5
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.2e-89 334.7 524 45.4
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.5e-89 334.3 528 45.3
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 9.8e-89 331.6 532 45.3
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.7e-88 329.7 528 45.6
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 4.1e-87 326.2 517 44.9
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.6e-86 324.3 506 46.0
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 6.6e-85 318.9 530 43.0
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.1e-82 311.6 498 44.8
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 2.3e-82 310.5 528 42.8
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 6.8e-82 308.9 498 44.8
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.2e-81 308.1 498 45.0
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.7e-80 304.3 536 40.9
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 4.9e-80 302.8 528 41.7
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.4e-79 301.2 559 40.1
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 7.1e-79 298.9 559 39.7
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.7e-78 297.0 434 45.9
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.3e-77 294.7 526 44.7
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 3.0e-77 293.5 505 40.4
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 3.0e-77 293.5 515 43.7
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.9e-77 293.1 559 39.4
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 4.3e-76 289.7 529 43.3
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 6.2e-75 285.8 576 38.9
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 6.8e-74 282.3 523 41.5
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 6.8e-74 282.3 530 40.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.3e-72 278.1 504 41.9
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.9e-72 276.9 524 41.8
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 6.4e-72 275.8 529 39.5
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.2e-71 273.5 525 39.2
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.7e-70 270.4 533 39.6
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 8.7e-69 265.4 506 38.7
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.3e-68 263.5 526 38.0
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.6e-67 261.2 515 39.2
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.6e-67 261.2 525 40.2
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.8e-67 260.4 500 40.2
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 1.4e-66 258.1 539 38.8
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.2e-65 255.0 514 40.1
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 9.9e-65 251.9 435 41.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.1e-63 248.4 529 37.1
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.4e-63 248.1 503 40.2
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.2e-63 246.5 518 37.6
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 9.3e-63 245.4 639 35.5
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 1.2e-62 245.0 537 39.1
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.6e-62 244.6 529 37.2
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.6e-62 244.6 492 39.2
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 7.8e-62 242.3 533 38.8
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 3.9e-61 240.0 537 38.9
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 5.1e-61 239.6 502 37.3
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.9e-60 237.7 531 36.3
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.5e-60 237.3 552 36.1
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.6e-59 234.6 498 38.0
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.6e-59 233.4 514 35.0
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.8e-59 233.0 501 35.7
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.8e-59 233.0 528 38.1
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 5.3e-58 229.6 526 37.6
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 9.0e-58 228.8 513 37.2
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 9.0e-58 228.8 500 36.6
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 1.2e-57 228.4 500 35.6
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.8e-56 223.4 496 36.1
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 1.9e-55 221.1 508 36.4
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 4.2e-55 219.9 518 36.3
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 7.1e-55 219.2 503 38.0
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 7.1e-55 219.2 501 36.9
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 9.3e-55 218.8 409 40.1
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.1e-54 217.6 494 35.8
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 8.7e-53 212.2 519 32.6
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.5e-52 211.5 531 34.7
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 5.6e-52 209.5 529 34.6
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.1e-51 207.6 528 36.7
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 1.2e-49 201.8 509 32.8
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 9.9e-49 198.7 483 35.6
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 4.2e-47 193.4 502 33.3
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 4.2e-47 193.4 509 33.6
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 4.6e-46 189.9 403 35.2
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.0e-45 188.7 492 35.4
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.3e-45 187.6 517 32.7
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 1.1e-44 185.3 495 35.2
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.9e-44 184.5 520 34.2
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 4.8e-43 179.9 521 30.9
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 6.9e-42 176.0 387 35.7
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 1.2e-41 175.3 516 32.0
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.2e-41 175.3 515 32.4
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.3e-40 171.8 398 33.9
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 1.4e-39 168.3 359 36.5
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.4e-39 168.3 535 31.6
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.5e-39 167.5 515 32.0
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 3.2e-39 167.2 401 32.9
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 7.1e-39 166.0 501 31.5
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 7.1e-39 166.0 398 33.4
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.2e-38 165.2 523 31.9
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.6e-38 164.9 497 31.8
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 4.6e-38 163.3 477 31.0
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 6.0e-38 162.9 495 31.3
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 7.9e-38 162.5 230 47.8
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.3e-37 161.8 501 31.7
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 2.3e-37 161.0 425 33.9
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 5.1e-37 159.8 520 31.7
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 8.7e-37 159.1 256 44.9
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.9e-36 157.9 517 30.6
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 4.3e-36 156.8 516 29.3
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.2e-35 154.5 404 33.7
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 6.3e-35 152.9 438 32.2
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 8.2e-35 152.5 484 31.0
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.4e-34 151.8 365 34.5
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.8e-34 151.4 411 31.1
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.4e-34 151.0 293 36.9
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.1e-34 150.6 256 43.8
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 1.5e-33 148.3 434 32.3
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 2.0e-33 147.9 434 32.3
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 2.0e-33 147.9 368 34.2
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 2.6e-33 147.5 413 30.8
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.0e-32 145.6 280 40.7
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 1.3e-32 145.2 374 32.9
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.9e-32 144.1 518 29.5
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 3.8e-32 143.7 529 30.6
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 3.8e-32 143.7 487 31.6
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 5.0e-32 143.3 496 30.0
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.1e-31 142.1 363 32.2
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 9.4e-31 139.0 405 31.4
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.1e-30 137.9 542 31.0
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 2.7e-30 137.5 371 32.1
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 2.7e-30 137.5 410 31.5
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.8e-29 134.8 515 28.9
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 5.1e-29 133.3 451 31.3
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 9.7e-28 129.0 266 40.2
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.7e-27 128.3 438 29.5
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.7e-27 128.3 572 27.6
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 6.3e-27 126.3 535 27.5
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.4e-26 124.4 366 33.3
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.1e-26 124.0 325 32.6
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 3.1e-26 124.0 513 26.7
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 1.5e-25 121.7 244 37.3
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 7.7e-25 119.4 217 41.5
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.3e-24 118.6 335 33.4
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 3.8e-24 117.1 235 39.1
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 8.5e-24 115.9 260 34.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.1e-23 115.5 375 30.1
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 2.5e-23 114.4 309 36.9
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 9.4e-23 112.5 369 29.5
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.0e-21 107.5 237 34.6
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 3.0e-21 107.5 338 30.5
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 8.8e-21 105.9 511 25.4
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.3e-20 104.0 338 29.0
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 9.7e-20 102.4 232 31.9
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.3e-19 102.1 252 33.7
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.7e-19 100.5 383 26.6
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.7e-19 100.5 291 30.6
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.7e-19 100.5 244 32.8
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 6.3e-19 99.8 255 37.3
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.1e-18 97.4 298 28.2
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.5e-17 95.1 221 32.6
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.9e-17 93.2 208 36.1
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 1.3e-16 92.0 356 27.2
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 1.7e-16 91.7 235 34.5
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 3.8e-16 90.5 288 31.6
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 6.5e-16 89.7 264 29.9
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 8.5e-16 89.4 257 34.2
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.9e-15 88.2 383 27.7
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 5.5e-15 86.7 384 28.6
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.2e-14 85.5 303 30.4
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.7e-11 73.9 447 25.5
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 5.9e-09 66.6 110 37.3
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 9.4e-07 59.3 74 44.6
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 1.2e-06 58.9 282 28.7
Glyma.06G061800 Glycine max HOM05D005497 ORTHO05D006733 1.6e-06 58.5 257 27.2


User provided reference genes

Program Settings