Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 5.5e-184 647.5 329 100.0
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.9e-148 528.1 330 81.8
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.7e-140 503.1 337 77.4
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 5.1e-97 358.6 332 63.6
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.5e-96 356.3 338 59.2
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 4.8e-95 352.1 341 58.4
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.2e-93 347.4 348 60.1
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.7e-92 343.6 342 57.0
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.9e-92 342.8 342 57.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-89 334.3 310 59.7
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.3e-89 333.2 294 61.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.6e-88 328.6 292 59.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 9.6e-88 327.8 321 58.3
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 3.7e-87 325.9 314 58.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 6.2e-87 325.1 330 58.8
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 8.2e-87 324.7 319 56.7
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 5.3e-86 322.0 326 57.4
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 6.5e-84 315.1 330 55.8
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.9e-83 313.5 324 58.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 4.2e-83 312.4 330 54.8
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.6e-82 310.5 326 53.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 4.6e-82 308.9 342 52.9
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 1.0e-81 307.8 319 57.4
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 5.1e-81 305.4 304 58.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 8.7e-81 304.7 316 52.5
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.1e-80 304.3 316 53.5
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.5e-80 303.9 307 57.3
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 3.3e-80 302.8 326 54.6
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 5.7e-80 302.0 325 52.0
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 9.7e-80 301.2 316 55.1
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.2e-79 300.1 326 54.0
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.2e-79 300.1 321 53.6
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 3.7e-79 299.3 292 59.2
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 6.3e-79 298.5 253 62.1
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 8.2e-79 298.1 306 54.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.4e-78 297.4 322 52.2
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.8e-78 297.0 316 53.8
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.8e-78 297.0 326 53.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.1e-78 296.2 317 53.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 4.1e-78 295.8 339 51.0
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 4.1e-78 295.8 299 58.5
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 5.3e-78 295.4 314 54.5
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 6.9e-78 295.0 318 53.8
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 6.9e-78 295.0 318 53.8
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.0e-77 293.5 319 52.0
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.0e-77 293.5 319 52.0
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.0e-77 293.5 313 54.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 5.9e-77 292.0 337 49.0
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.6e-77 291.6 338 49.1
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.2e-76 290.0 316 54.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.8e-76 289.3 290 56.2
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 3.8e-76 289.3 329 52.0
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.5e-76 288.5 307 54.4
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 8.5e-76 288.1 322 53.1
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.1e-75 287.7 265 58.5
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.4e-75 287.3 276 56.9
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.5e-75 286.6 339 49.3
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 3.2e-75 286.2 231 62.8
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 4.2e-75 285.8 311 52.7
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.2e-75 285.8 316 51.3
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 4.2e-75 285.8 370 46.2
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 7.2e-75 285.0 229 63.8
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.1e-74 283.5 272 56.2
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 3.6e-74 282.7 356 49.2
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 7.9e-74 281.6 313 52.4
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.4e-73 280.8 211 66.8
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.9e-73 279.3 343 49.3
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 4.3e-72 275.8 300 52.3
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 2.2e-71 273.5 319 48.9
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.1e-70 271.2 300 52.3
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.4e-70 270.8 356 47.8
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 4.1e-70 269.2 212 65.1
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.2e-67 259.6 268 52.6
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.2e-66 257.7 274 55.8
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.8e-65 253.8 259 57.9
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 8.8e-65 251.5 324 45.4
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.1e-64 251.1 230 56.5
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.3e-64 249.6 206 61.2
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.4e-64 248.4 321 50.2
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.7e-63 247.3 330 44.2
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.7e-63 247.3 247 53.4
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.2e-63 246.9 347 45.5
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.7e-63 246.1 210 56.7
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-62 244.6 321 49.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.8e-62 243.8 297 49.5
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.9e-59 233.8 212 60.4
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.7e-58 229.2 323 44.3
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 8.0e-58 228.4 208 54.8
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.0e-57 228.0 209 60.3
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.3e-57 226.9 301 45.5
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-55 220.7 306 45.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.4e-54 216.9 243 51.4
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.4e-54 216.9 215 54.4
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 3.1e-54 216.5 215 54.0
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 5.3e-54 215.7 230 50.0
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.2e-53 214.5 233 48.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 1.1e-51 208.0 328 39.9
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.2e-50 204.5 169 65.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 8.0e-50 201.8 314 42.7
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.0e-49 199.9 202 54.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 3.3e-48 196.4 197 53.3
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.3e-47 192.2 223 49.8
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.4e-46 191.0 235 47.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 2.0e-45 187.2 299 40.5
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.5e-45 186.0 230 47.4
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.0e-44 184.9 234 43.6
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.2e-44 183.7 228 45.6
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.2e-43 179.5 229 45.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 7.2e-43 178.7 229 43.7
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 6.1e-42 175.6 325 42.5
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.3e-41 173.7 217 44.2
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.0e-41 172.9 226 44.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 5.2e-41 172.6 158 57.6
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 5.2e-41 172.6 203 45.3
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 9.8e-40 168.3 217 43.8
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.3e-39 167.9 131 67.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.7e-39 167.5 211 42.2
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.8e-38 164.1 202 47.0
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.1e-38 163.3 216 43.5
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 9.1e-38 161.8 243 39.5
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.0e-37 160.6 133 61.7
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 4.5e-37 159.5 146 61.6
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.3e-36 157.9 208 43.3
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 5.0e-36 156.0 206 41.7
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.5e-35 153.7 236 39.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 7.2e-35 152.1 222 38.3
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.6e-34 149.8 337 35.6
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 6.1e-34 149.1 222 40.5
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 8.9e-33 145.2 193 43.5
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.4e-30 137.9 163 49.1
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.2e-29 134.8 233 38.6
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.0e-29 134.0 142 50.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.0e-29 134.0 110 62.7
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-27 128.3 93 64.5
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.5e-27 127.1 101 68.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.5e-27 127.1 121 54.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 7.3e-27 125.6 107 61.7
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.2e-24 118.2 133 45.1
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 7.5e-24 115.5 76 76.3
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.2e-22 110.2 74 68.9
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.3e-19 100.1 70 70.0
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 4.7e-18 96.3 175 38.9
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-17 92.8 137 34.3
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-14 85.1 72 63.9
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.1e-13 80.9 85 55.3
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 7.3e-11 72.4 78 46.2
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.6e-08 63.9 44 65.9
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.9e-07 59.7 41 65.9
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 1.4e-06 58.2 153 30.1


User provided reference genes

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