Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G182300 Phaseolus vulgaris HOM05D007687 ORTHO05D009692 1.3e-145 519.6 254 100.0
VMungo1215G2041 Vigna mungo HOM05D007687 ORTHO05D009692 4.6e-98 361.7 251 75.7
Glyma.17G081600 Glycine max HOM05D007687 ORTHO05D009692 1.3e-60 237.3 252 55.2
Glyma.05G018400 Glycine max HOM05D007687 ORTHO05D009692 1.7e-52 210.3 237 52.3
Lj4g0013896 Lotus japonicus HOM05D007687 ORTHO05D009692 8.9e-33 144.8 262 37.8
QL10p020735 Quercus lobata HOM05D007687 ORTHO05D009692 1.7e-23 114.0 242 35.5
Medtr4g109950 Medicago truncatula HOM05D007687 ORTHO05D009692 2.7e-21 106.7 188 39.4
Duzib068G1012 Durio zibethinus HOM05D007687 ORTHO05D009692 4.6e-21 105.9 263 31.9
Sed0010577 Sechium edule HOM05D007687 ORTHO05D009692 1.7e-20 104.0 190 36.3
Medtr2g461550 Medicago truncatula HOM05D007687 ORTHO05D009692 2.3e-20 103.6 242 34.7
Duzib084G0111 Durio zibethinus HOM05D007687 ORTHO05D009692 3.0e-20 103.2 250 32.8
Thecc.03G108300 Theobroma cacao HOM05D007687 ORTHO05D009692 1.1e-19 101.3 259 32.4
Ciclev10024235m.g Citrus clementina HOM05D007687 ORTHO05D009692 1.3e-18 97.8 182 36.3
Manes.14G089000 Manihot esculenta HOM05D007687 ORTHO05D009692 3.6e-18 96.3 256 29.3
CiPaw.15G114100 Carya illinoinensis HOM05D007687 ORTHO05D009692 6.2e-18 95.5 251 30.7
Duzib205G1319 Durio zibethinus HOM05D007687 ORTHO05D009692 1.1e-17 94.7 249 31.3
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 2.4e-17 93.6 244 36.1
Actinidia10442 Actinidia chinensis HOM05D007687 ORTHO05D009692 5.3e-17 92.4 232 34.1
MD14G1216500 Malus domestica HOM05D007687 ORTHO05D009692 9.0e-17 91.7 287 32.1
Oeu044771.1 Olea europaea HOM05D007687 ORTHO05D009692 9.0e-17 91.7 185 35.1
CAN.G982.38 Capsicum annuum HOM05D007687 ORTHO05D009692 5.8e-16 89.0 263 31.2
CsaV3_1G006250 Cucumis sativus L. HOM05D007687 ORTHO05D009692 5.8e-16 89.0 216 34.7
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 9.9e-16 88.2 192 35.4
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 9.9e-16 88.2 250 33.2
Prupe.5G209900 Prunus persica HOM05D007687 ORTHO05D009692 1.7e-15 87.4 244 31.1
Cfa016835 Carpinus fangiana HOM05D007687 ORTHO05D009692 8.4e-15 85.1 91 52.7
Potri.015G048600 Populus trichocarpa HOM05D007687 ORTHO05D009692 1.1e-14 84.7 183 35.0
Nitab4.5_0002467g0050 Nicotiana tabacum HOM05D007687 ORTHO05D009692 1.4e-14 84.3 201 32.3
Nn4g23535 Nelumbo nucifera HOM05D007687 ORTHO05D009692 3.2e-14 83.2 218 33.0
TPR.G7811 Trifolium pratense HOM05D007687 ORTHO05D009692 9.3e-14 81.6 243 30.9
AL8G37500 Arabidopsis lyrata HOM05D007687 ORTHO05D009692 1.2e-13 81.3 208 29.3
AT5G60880 Arabidopsis thaliana HOM05D007687 ORTHO05D009692 2.7e-13 80.1 207 30.9
Cc04_g08290 Coffea canephora HOM05D007687 ORTHO05D009692 3.5e-13 79.7 190 32.1
BcaNung02611 Brassica carinata HOM05D007687 ORTHO05D009692 4.6e-13 79.3 182 34.1
C07p44640 Brassica napus HOM05D007687 ORTHO05D009692 4.6e-13 79.3 182 34.1
BolC7t44987H Brassica oleracea HOM05D007687 ORTHO05D009692 4.6e-13 79.3 182 33.0
Aa31LG11G2410 Aethionema arabicum HOM05D007687 ORTHO05D009692 6.0e-13 79.0 185 34.1
BcaC06g33202 Brassica carinata HOM05D007687 ORTHO05D009692 6.0e-13 79.0 190 32.6
Sp2g24190 Schrenkiella parvula HOM05D007687 ORTHO05D009692 1.0e-12 78.2 183 32.2
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 3.9e-12 76.3 181 31.5
Peaxi162Scf00017g03282 Petunia axillaris HOM05D007687 ORTHO05D009692 5.1e-12 75.9 196 32.1
CARHR274560 Cardamine hirsuta HOM05D007687 ORTHO05D009692 8.7e-12 75.1 189 32.8
Gohir.A09G243800 Gossypium hirsutum HOM05D007687 ORTHO05D009692 1.1e-11 74.7 188 30.9
Gorai.006G268500 Gossypium raimondii HOM05D007687 ORTHO05D009692 1.1e-11 74.7 185 29.2
Sabra15G0078700 Salix brachista HOM05D007687 ORTHO05D009692 2.5e-11 73.6 220 32.7
BraA03t13781Z Brassica rapa HOM05D007687 ORTHO05D009692 4.3e-11 72.8 182 32.4
PGSC0003DMG400024621 Solanum tuberosum HOM05D007687 ORTHO05D009692 7.4e-11 72.0 243 28.8
Manes.06G080900 Manihot esculenta HOM05D007687 ORTHO05D009692 9.6e-11 71.6 231 28.6
THA.LOC104801051 Tarenaya hassleriana HOM05D007687 ORTHO05D009692 9.6e-11 71.6 187 32.6
BcaB04g19894 Brassica carinata HOM05D007687 ORTHO05D009692 1.3e-10 71.2 182 34.6
FvH4_5g13402 Fragaria vesca HOM05D007687 ORTHO05D009692 1.3e-10 71.2 138 38.4
FAN18G0959 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.3e-10 71.2 138 38.4
BolC9t53708H Brassica oleracea HOM05D007687 ORTHO05D009692 4.8e-10 69.3 182 31.9
BcaC04g23476 Brassica carinata HOM05D007687 ORTHO05D009692 6.2e-10 68.9 182 30.8
CANSAT56G1485 Cannabis sativa HOM05D007687 ORTHO05D009692 8.1e-10 68.6 179 31.3
Thhalv10004801m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 8.1e-10 68.6 172 30.8
CANSAT56G0292 Cannabis sativa HOM05D007687 ORTHO05D009692 1.1e-09 68.2 179 31.3
FAN08G0723 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.4e-09 67.8 58 63.8
C09p07960 Brassica napus HOM05D007687 ORTHO05D009692 3.1e-09 66.6 182 30.8
Solyc03g114770.3 Solanum lycopersicum HOM05D007687 ORTHO05D009692 3.1e-09 66.6 207 30.0
Sopen03g033850 Solanum pennellii HOM05D007687 ORTHO05D009692 6.9e-09 65.5 208 29.8
Ah.11g047410 Amaranthus hybridus HOM05D024623 ORTHO05D023410 9.0e-09 65.1 63 46.0
Thhalv10015806m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 1.2e-08 64.7 59 52.5
Carub.0008s2158 Capsella rubella HOM05D007687 ORTHO05D009692 2.0e-08 63.9 55 52.7
A03p46570 Brassica napus HOM05D007687 ORTHO05D009692 3.4e-08 63.2 87 41.4
PGR031G0897 Punica granatum HOM05D007687 ORTHO05D009692 5.8e-08 62.4 186 30.1
Nitab4.5_0005994g0030 Nicotiana tabacum HOM05D007687 ORTHO05D009692 7.6e-08 62.0 193 28.0
A09p07100 Brassica napus HOM05D007687 ORTHO05D009692 3.8e-07 59.7 55 50.9
BraA09t36360Z Brassica rapa HOM05D007687 ORTHO05D009692 3.8e-07 59.7 55 50.9
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 4.9e-07 59.3 58 53.4
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 4.2e-06 56.2 108 33.3
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 5.5e-06 55.8 54 51.9
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 7.1e-06 55.5 54 48.1
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 7.1e-06 55.5 63 49.2
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 7.1e-06 55.5 54 51.9
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.3e-06 55.1 58 48.3
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 9.3e-06 55.1 58 48.3
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 9.3e-06 55.1 66 39.4
Medtr2g461480 Medicago truncatula HOM05D011573 ORTHO05D014451 9.3e-06 55.1 55 45.5
Medtr4g109910 Medicago truncatula HOM05D007687 ORTHO05D009692 9.3e-06 55.1 45 62.2
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 9.3e-06 55.1 58 48.3


User provided reference genes

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