Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G180400 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 1.7e-142 509.2 244 100.0
Phvul.003G180500 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 2.9e-105 385.6 253 76.7
Phvul.L006943 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 8.2e-92 340.9 256 69.1
Phvul.002G142400 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 4.4e-61 238.8 203 63.1
Glyma.17G083900 Glycine max HOM05D002915 ORTHO05D003004 2.9e-49 199.5 214 46.3
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 3.4e-45 186.0 242 41.3
Lalb_Chr18g0050831 Lupinus albus HOM05D002915 ORTHO05D003004 1.7e-44 183.7 243 42.0
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 2.7e-42 176.4 234 42.3
Lj6g0013707 Lotus japonicus HOM05D002915 ORTHO05D003004 2.3e-41 173.3 176 47.7
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 2.9e-41 172.9 176 49.4
Lj1g0003622 Lotus japonicus HOM05D002915 ORTHO05D003004 3.3e-40 169.5 179 44.7
Psat0s3757g0040 Pisum sativum HOM05D002915 ORTHO05D003004 4.2e-40 169.1 176 48.9
Lj2g0021070 Lotus japonicus HOM05D002915 ORTHO05D003004 7.2e-40 168.3 213 40.4
Lj4g0014849 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-39 167.2 237 40.5
Lj6g0019512 Lotus japonicus HOM05D002915 ORTHO05D003004 2.8e-39 166.4 176 46.6
Lalb_Chr10g0105601 Lupinus albus HOM05D002915 ORTHO05D003004 2.8e-39 166.4 206 41.7
Lj2g0026934 Lotus japonicus HOM05D002915 ORTHO05D003004 3.6e-39 166.0 175 46.9
Lj1g0028201 Lotus japonicus HOM05D002915 ORTHO05D003004 4.7e-39 165.6 183 46.4
Lj2g0014982 Lotus japonicus HOM05D002915 ORTHO05D003004 6.1e-39 165.2 237 40.1
Psat0s6185g0040 Pisum sativum HOM05D002915 ORTHO05D003004 6.1e-39 165.2 176 47.2
Lj3g0011377 Lotus japonicus HOM05D002915 ORTHO05D003004 2.3e-38 163.3 177 44.6
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 3.4e-37 159.5 235 39.1
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 4.4e-37 159.1 207 44.0
Lj1g0000366 Lotus japonicus HOM05D002915 ORTHO05D003004 5.7e-37 158.7 207 41.5
Lj3g0026757 Lotus japonicus HOM05D002915 ORTHO05D003004 2.2e-36 156.8 174 45.4
Lj4g0005635 Lotus japonicus HOM05D002915 ORTHO05D003004 6.3e-36 155.2 200 41.0
Lj4g0013622 Lotus japonicus HOM05D002915 ORTHO05D003004 6.3e-36 155.2 200 41.5
Lj4g0025234 Lotus japonicus HOM05D002915 ORTHO05D003004 8.3e-36 154.8 248 35.9
Lj4g0001937 Lotus japonicus HOM05D002915 ORTHO05D003004 5.4e-35 152.1 200 40.5
Lj5g0016376 Lotus japonicus HOM05D002915 ORTHO05D003004 9.2e-35 151.4 234 38.5
Lj3g0023229 Lotus japonicus HOM05D002915 ORTHO05D003004 1.2e-34 151.0 247 40.1
Lj5g0000576 Lotus japonicus HOM05D002915 ORTHO05D003004 2.9e-33 146.4 230 37.8
Lj6g0021938 Lotus japonicus HOM05D002915 ORTHO05D003004 8.6e-33 144.8 213 40.4
arahy.Tifrunner.gnm1.ann1.JTPM3R Arachis hypogaea HOM05D000176 ORTHO05D000106 2.5e-32 143.3 185 43.8
Lj6g0001752 Lotus japonicus HOM05D002915 ORTHO05D003004 2.1e-31 140.2 198 38.9
TPR.G19429 Trifolium pratense HOM05D002915 ORTHO05D003004 8.0e-31 138.3 178 38.2
Medtr4g112590 Medicago truncatula HOM05D002915 ORTHO05D003004 2.2e-28 130.2 208 39.4
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 6.2e-23 112.1 184 37.0
Medtr5g033770 Medicago truncatula HOM05D002915 ORTHO05D003004 3.1e-22 109.8 184 33.7
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 5.2e-22 109.0 190 34.7
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 1.2e-21 107.8 251 29.5
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.5e-21 107.5 248 34.7
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 1.5e-21 107.5 186 35.5
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 3.4e-21 106.3 255 28.6
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 5.8e-21 105.5 185 33.5
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 9.8e-21 104.8 235 31.5
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.3e-20 104.4 183 36.1
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 1.3e-20 104.4 186 32.8
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 2.9e-20 103.2 183 33.9
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 3.7e-20 102.8 183 36.6
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 3.7e-20 102.8 183 36.6
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 4.9e-20 102.4 244 30.3
Glyma.07G247800 Glycine max HOM05D002915 ORTHO05D003004 8.3e-20 101.7 179 34.6
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 8.3e-20 101.7 186 32.8
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 8.3e-20 101.7 243 28.0
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 4.1e-19 99.4 244 29.9
Gorai.006G126100 Gossypium raimondii HOM05D002915 ORTHO05D003004 7.0e-19 98.6 196 32.1
Medtr3g075360 Medicago truncatula HOM05D002915 ORTHO05D003004 7.0e-19 98.6 185 32.4
Gohir.D09G108500 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.6e-18 97.4 196 32.1
Gorai.006G126200 Gossypium raimondii HOM05D002915 ORTHO05D003004 2.1e-18 97.1 196 32.1
Gohir.D09G108400 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.7e-18 96.7 196 31.6
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 2.7e-18 96.7 188 35.1
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 7.8e-18 95.1 251 26.7
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 7.8e-18 95.1 235 28.9
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 1.3e-17 94.4 257 26.1
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.3e-17 93.6 178 29.8
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 3.0e-17 93.2 249 26.5
Gohir.A09G111900 Gossypium hirsutum HOM05D002915 ORTHO05D003004 5.1e-17 92.4 196 31.1
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 6.6e-17 92.0 176 33.0
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 6.6e-17 92.0 178 34.3
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 8.6e-17 91.7 183 31.7
Ciclev10006753m.g Citrus clementina HOM05D002915 ORTHO05D003004 2.5e-16 90.1 124 37.9
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 2.5e-16 90.1 194 29.4
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.5e-16 90.1 189 28.6
PGR142G3351 Punica granatum HOM05D002915 ORTHO05D003004 3.3e-16 89.7 179 32.4
Glyma.02G238900 Glycine max HOM05D002915 ORTHO05D003004 5.6e-16 89.0 133 40.6
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 5.6e-16 89.0 120 36.7
Ca_21504_v3 Cicer arietinum L. HOM05D002915 ORTHO05D003004 7.3e-16 88.6 179 30.2
Cc02_g04260 Coffea canephora HOM05D002915 ORTHO05D003004 7.3e-16 88.6 184 31.5
Duzib150G0710 Durio zibethinus HOM05D002915 ORTHO05D003004 9.5e-16 88.2 197 31.0
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 1.6e-15 87.4 222 27.0
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 2.1e-15 87.0 226 26.5
Aqoxy1G01229 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.1e-15 87.0 179 31.8
Cc05_g03590 Coffea canephora HOM05D002915 ORTHO05D003004 2.1e-15 87.0 176 30.1
Gorai.007G046700 Gossypium raimondii HOM05D002915 ORTHO05D003004 2.1e-15 87.0 177 33.9
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 2.1e-15 87.0 233 28.3
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.1e-15 87.0 189 27.5
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 2.8e-15 86.7 231 28.6
Hund03449 Selenicereus undatus HOM05D002915 ORTHO05D003004 4.7e-15 85.9 198 28.8
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 6.2e-15 85.5 187 31.0
CSS0048418 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 8.1e-15 85.1 121 35.5
HanXRQChr05g0131161 Helianthus annuus HOM05D002915 ORTHO05D003004 1.8e-14 84.0 188 29.8
Gohir.D11G043350 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.3e-14 83.6 177 32.8
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 3.1e-14 83.2 246 25.6
FAN26G0404 Fragaria x ananassa HOM05D002915 ORTHO05D003004 3.1e-14 83.2 230 27.4
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.1e-14 83.2 197 28.4
FAN19G1392 Fragaria x ananassa HOM05D002915 ORTHO05D003004 4.0e-14 82.8 228 26.3
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 4.0e-14 82.8 192 30.7
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 5.2e-14 82.4 189 29.1
Gorai.009G177500 Gossypium raimondii HOM05D002915 ORTHO05D003004 5.2e-14 82.4 190 31.1
Thecc.09G039200 Theobroma cacao HOM05D002915 ORTHO05D003004 5.2e-14 82.4 185 31.4
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 8.9e-14 81.6 177 27.1
Sed0005801 Sechium edule HOM05D002915 ORTHO05D003004 1.2e-13 81.3 183 29.0
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.0e-13 80.5 180 28.9
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 2.0e-13 80.5 192 27.1
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 2.6e-13 80.1 242 27.7
Cc00_g21400 Coffea canephora HOM05D002915 ORTHO05D003004 3.4e-13 79.7 174 28.7
MELO3C034049.2 Cucumis melo HOM05D002915 ORTHO05D003004 3.4e-13 79.7 185 29.2
CsaV3_1G004340 Cucumis sativus L. HOM05D002915 ORTHO05D003004 3.4e-13 79.7 228 27.6
Gohir.A11G040100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.4e-13 79.7 177 31.6
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 9.9e-13 78.2 244 25.4
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 9.9e-13 78.2 244 25.4
FAN17G1773 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.3e-12 77.8 232 27.6
COL.COLO4_36468 Corchorus olitorius HOM05D002915 ORTHO05D003004 1.7e-12 77.4 250 30.0
Thecc.06G218700 Theobroma cacao HOM05D002915 ORTHO05D003004 2.9e-12 76.6 189 30.2
Glyma.17G026300 Glycine max HOM05D002915 ORTHO05D003004 4.9e-12 75.9 153 32.7
AT1G74875 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 8.3e-12 75.1 190 27.4
arahy.Tifrunner.gnm1.ann1.J68HPB Arachis hypogaea HOM05D002915 ORTHO05D003004 8.3e-12 75.1 131 36.6
MELO3C011803.2 Cucumis melo HOM05D002915 ORTHO05D003004 8.3e-12 75.1 187 27.8
SGA_v2.0_scaffold169G38697 Striga asiatica HOM05D002915 ORTHO05D003004 8.3e-12 75.1 176 34.7
Eucgr.G01570 Eucalyptus grandis HOM05D002915 ORTHO05D003004 1.4e-11 74.3 181 28.7
Cc03_g08730 Coffea canephora HOM05D002915 ORTHO05D003004 1.9e-11 73.9 119 34.5
Sopen04g019620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-11 73.9 195 27.2
CANSAT64G2697 Cannabis sativa HOM05D002915 ORTHO05D003004 3.2e-11 73.2 190 29.5
MELO3C029741.2 Cucumis melo HOM05D002915 ORTHO05D003004 4.1e-11 72.8 252 27.0
Cpa.g.sc85.123 Carica papaya HOM05D002915 ORTHO05D003004 5.4e-11 72.4 120 35.0
TPR.G30653 Trifolium pratense HOM05D002915 ORTHO05D003004 5.4e-11 72.4 97 38.1
Carub.0002s1396 Capsella rubella HOM05D002915 ORTHO05D003004 9.2e-11 71.6 185 28.1
PGSC0003DMG400043877 Solanum tuberosum HOM05D002915 ORTHO05D003004 9.2e-11 71.6 227 27.3
CSS0049349 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 1.2e-10 71.2 132 31.1
Migut.C00066 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.2e-10 71.2 193 26.9
Sopen06g010910 Solanum pennellii HOM05D000025 ORTHO05D000136 1.2e-10 71.2 190 27.4
Duzib168G1329 Durio zibethinus HOM05D002915 ORTHO05D003004 2.1e-10 70.5 122 33.6
Migut.C00063 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.1e-10 70.5 147 29.3
CAN.G1143.27 Capsicum annuum HOM05D002915 ORTHO05D003004 3.5e-10 69.7 180 25.0
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 3.5e-10 69.7 184 27.2
Migut.H01084 Erythranthe guttata HOM05D002915 ORTHO05D003004 4.6e-10 69.3 193 24.9
PGSC0003DMG400043813 Solanum tuberosum HOM05D002915 ORTHO05D003004 6.0e-10 68.9 201 27.9
SGA_v2.0_scaffold51G18778 Striga asiatica HOM05D002915 ORTHO05D003004 6.0e-10 68.9 138 31.9
Duzib168G1942 Durio zibethinus HOM05D002915 ORTHO05D003004 7.8e-10 68.6 170 28.8
Migut.F00476 Erythranthe guttata HOM05D002915 ORTHO05D003004 7.8e-10 68.6 240 23.8
FAN23G0131 Fragaria x ananassa HOM05D002915 ORTHO05D003004 7.8e-10 68.6 117 32.5
Migut.F00575 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.3e-09 67.8 181 26.0
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 1.3e-09 67.8 188 25.0
Aqoxy4G02244 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 1.7e-09 67.4 178 27.5
Ciclev10033456m.g Citrus clementina HOM05D002915 ORTHO05D003004 1.7e-09 67.4 109 35.8
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 2.3e-09 67.0 257 28.0
Medtr4g123430 Medicago truncatula HOM05D002915 ORTHO05D003004 3.9e-09 66.2 153 31.4
CARHR046130 Cardamine hirsuta HOM05D002915 ORTHO05D003004 5.1e-09 65.9 107 32.7
Cc00_g09710 Coffea canephora HOM05D002915 ORTHO05D003004 5.1e-09 65.9 118 32.2
Thhalv10019642m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 6.6e-09 65.5 82 43.9
FAN28G1700 Fragaria x ananassa HOM05D002915 ORTHO05D003004 8.6e-09 65.1 117 30.8
FAN28G2009 Fragaria x ananassa HOM05D002915 ORTHO05D003004 8.6e-09 65.1 117 30.8
FAN28G2017 Fragaria x ananassa HOM05D002915 ORTHO05D003004 8.6e-09 65.1 117 30.8
BolC6t39177H Brassica oleracea HOM05D002915 ORTHO05D003004 1.5e-08 64.3 181 28.2
FAN12G2317 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.9e-08 63.9 119 32.8
AL2G26290 Arabidopsis lyrata HOM05D002915 ORTHO05D003004 2.5e-08 63.5 187 27.8
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 5.6e-08 62.4 98 36.7
PGSC0003DMG400021580 Solanum tuberosum HOM05D002915 ORTHO05D003004 5.6e-08 62.4 189 27.5
A07p34150 Brassica napus HOM05D002915 ORTHO05D003004 7.3e-08 62.0 180 27.8
DCAR_018110 Daucus carota HOM05D002915 ORTHO05D003004 9.5e-08 61.6 190 27.4
VMungo0331G0667 Vigna mungo HOM05D017611 ORTHO05D019387 1.6e-07 60.8 63 55.6
PGSC0003DMG400037269 Solanum tuberosum HOM05D002915 ORTHO05D003004 2.8e-07 60.1 253 23.3
Eucgr.G01397 Eucalyptus grandis HOM05D002915 ORTHO05D003004 4.7e-07 59.3 132 31.8
Lj6A815T43 Lonicera japonica HOM05D002915 ORTHO05D003004 1.4e-06 57.8 118 28.8
Migut.H01190 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.8e-06 57.4 216 25.9
Cc08_g03020 Coffea canephora HOM05D002915 ORTHO05D003004 3.1e-06 56.6 183 25.1
PGSC0003DMG400038597 Solanum tuberosum HOM05D002915 ORTHO05D003004 4.0e-06 56.2 156 27.6
BcaB03g15181 Brassica carinata HOM05D002915 ORTHO05D003004 5.2e-06 55.8 175 26.9
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 8.9e-06 55.1 186 25.8


User provided reference genes

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