Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.1e-48 196.4 111 100.0
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 2.1e-26 122.5 119 67.2
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 3.0e-25 118.6 119 63.9
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 2.1e-23 112.5 112 72.3
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 5.3e-22 107.8 121 61.2
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 4.5e-21 104.8 117 59.8
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.9e-19 99.4 111 60.4
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 7.1e-19 97.4 105 58.1
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-16 90.1 110 61.8
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-16 90.1 106 52.8
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.9e-16 89.4 109 56.9
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.3e-16 88.6 105 53.3
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 3.3e-16 88.6 115 57.4
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 9.7e-16 87.0 106 54.7
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.6e-15 86.3 106 54.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.7e-15 85.1 105 52.4
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 4.8e-15 84.7 127 44.1
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 6.3e-15 84.3 114 45.6
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-14 83.6 108 48.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.4e-14 83.2 122 43.4
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 2.4e-14 82.4 119 45.4
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.1e-14 81.6 120 44.2
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 6.9e-14 80.9 117 40.2
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.5e-13 79.7 114 51.8
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-13 79.7 118 45.8
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 1.5e-13 79.7 110 46.4
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.6e-13 79.0 112 47.3
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.4e-13 78.6 112 47.3
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.4e-13 78.6 112 46.4
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 3.4e-13 78.6 126 42.1
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.4e-13 78.6 125 50.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 4.5e-13 78.2 111 48.6
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 5.9e-13 77.8 123 42.3
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 5.9e-13 77.8 116 44.8
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.3e-12 76.6 106 49.1
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.7e-12 76.3 112 50.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.9e-12 75.5 113 42.5
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 3.8e-12 75.1 110 43.6
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.8e-12 75.1 119 44.5
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 5.0e-12 74.7 118 41.5
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 5.0e-12 74.7 124 41.9
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 6.5e-12 74.3 109 45.0
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 6.5e-12 74.3 116 45.7
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 8.5e-12 73.9 79 51.9
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 8.5e-12 73.9 112 45.5
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 8.5e-12 73.9 102 45.1
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.1e-11 73.6 112 42.0
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.1e-11 73.6 102 45.1
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.4e-11 73.2 110 43.6
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.4e-11 73.2 110 45.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.4e-11 73.2 117 40.2
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.5e-11 72.4 116 44.0
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 2.5e-11 72.4 77 49.4
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 2.5e-11 72.4 136 39.7
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 3.2e-11 72.0 127 39.4
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 3.2e-11 72.0 71 64.8
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 3.2e-11 72.0 121 41.3
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 3.2e-11 72.0 119 41.2
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 5.5e-11 71.2 81 49.4
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 5.5e-11 71.2 128 39.8
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 7.2e-11 70.9 113 41.6
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 7.2e-11 70.9 120 40.8
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.2e-10 70.1 112 43.8
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.2e-10 70.1 111 45.0
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.6e-10 69.7 112 43.8
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.6e-10 69.7 112 50.0
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.6e-10 68.6 125 39.2
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.6e-10 68.2 86 46.5
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 4.6e-10 68.2 110 40.0
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.1e-10 67.8 115 39.1
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.1e-10 67.8 106 57.5
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.1e-10 67.8 123 42.3
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 6.1e-10 67.8 123 42.3
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 6.1e-10 67.8 103 42.7
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 6.1e-10 67.8 119 41.2
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 7.9e-10 67.4 109 44.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.0e-09 67.0 130 39.2
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.0e-09 67.0 114 43.9
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.0e-09 67.0 120 40.0
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.4e-09 66.6 78 50.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 1.4e-09 66.6 121 41.3
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.4e-09 66.6 126 38.9
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.8e-09 66.2 108 50.0
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.3e-09 65.9 122 42.6
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.3e-09 65.9 122 42.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.3e-09 65.9 123 40.7
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.0e-09 65.5 115 40.0
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 3.0e-09 65.5 113 49.6
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 3.9e-09 65.1 111 44.1
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 5.1e-09 64.7 80 57.5
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 6.7e-09 64.3 122 41.0
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.5e-08 63.2 107 40.2
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.9e-08 62.8 104 45.2
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.5e-08 62.4 129 37.2
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 2.5e-08 62.4 125 36.0
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 2.5e-08 62.4 102 41.2
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 2.5e-08 62.4 80 56.2
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.3e-08 62.0 112 40.2
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.3e-08 62.0 115 39.1
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 4.3e-08 61.6 131 36.6
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.7e-08 61.2 72 45.8
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 1.3e-07 60.1 112 36.6
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.7e-07 59.7 68 57.4
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.7e-07 59.7 128 35.9
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-07 59.7 104 44.2
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.7e-07 59.7 102 52.9
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.8e-07 58.9 122 45.1
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.8e-07 58.9 121 34.7
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.7e-07 58.5 130 35.4
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 4.8e-07 58.2 115 38.3
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 4.8e-07 58.2 126 34.1
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 4.8e-07 58.2 118 38.1
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 6.3e-07 57.8 115 38.3
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 8.2e-07 57.4 124 35.5
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 3.1e-06 55.5 73 41.1
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.1e-06 55.1 129 37.2
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 5.3e-06 54.7 26 92.3
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 6.9e-06 54.3 29 82.8
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 6.9e-06 54.3 113 38.1
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 9.1e-06 53.9 23 100.0


User provided reference genes

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