Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 6.6e-66 253.8 122 100.0
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 1.7e-61 239.2 121 94.2
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 1.2e-54 216.5 123 87.0
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 2.2e-53 212.2 122 84.4
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 1.6e-43 179.5 123 74.0
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.3e-42 176.4 122 73.8
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 4.7e-40 167.9 121 72.7
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 3.1e-39 165.2 126 67.5
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 2.0e-38 162.5 121 66.9
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 1.7e-37 159.5 129 68.2
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 2.2e-37 159.1 122 67.2
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.1e-20 103.6 126 48.4
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.6e-19 98.2 113 51.3
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 6.0e-19 97.8 114 50.0
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.3e-18 95.9 120 46.7
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.3e-18 95.9 115 50.4
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 1.1e-17 93.6 147 45.6
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.3e-17 91.7 129 41.9
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.3e-17 90.9 130 46.9
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.3e-17 90.9 129 45.7
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 7.3e-17 90.9 127 44.1
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 7.3e-17 90.9 132 43.2
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 9.6e-17 90.5 125 42.4
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 2.1e-16 89.4 145 42.8
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.6e-16 88.6 135 43.0
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.8e-16 88.2 131 41.2
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.8e-16 88.2 131 41.2
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.8e-16 88.2 125 41.6
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.1e-16 87.4 112 49.1
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.1e-15 87.0 149 42.3
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.4e-15 86.7 132 40.9
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.1e-15 85.5 120 42.5
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 4.0e-15 85.1 131 41.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 4.0e-15 85.1 130 41.5
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 9.0e-15 84.0 139 43.9
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.2e-14 83.6 138 42.0
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.5e-14 83.2 117 42.7
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.5e-14 83.2 117 42.7
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 2.0e-14 82.8 87 57.5
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 3.4e-14 82.0 126 43.7
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 4.5e-14 81.6 139 38.1
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.3e-13 80.1 131 40.5
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.3e-13 80.1 150 38.7
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.3e-13 80.1 116 44.0
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 3.8e-13 78.6 117 43.6
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.9e-13 78.2 111 43.2
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 4.9e-13 78.2 132 41.7
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 4.9e-13 78.2 136 43.4
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 6.4e-13 77.8 115 42.6
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 8.4e-13 77.4 128 39.8
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 8.4e-13 77.4 127 43.3
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.1e-12 77.0 139 39.6
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.1e-12 77.0 122 41.0
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.4e-12 76.6 113 43.4
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.4e-12 76.6 153 35.9
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.9e-12 76.3 112 43.8
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 3.2e-12 75.5 123 42.3
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 4.2e-12 75.1 113 40.7
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.4e-12 74.7 134 40.3
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.4e-12 74.7 134 40.3
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 7.1e-12 74.3 90 54.4
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 7.1e-12 74.3 121 38.0
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 9.3e-12 73.9 121 35.5
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 1.2e-11 73.6 133 36.8
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.2e-11 73.6 113 40.7
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.6e-11 73.2 134 39.6
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.7e-11 72.4 86 46.5
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 2.7e-11 72.4 79 48.1
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 2.7e-11 72.4 69 52.2
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.7e-11 72.4 121 41.3
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.5e-11 72.0 127 42.5
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.5e-11 72.0 127 42.5
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 3.5e-11 72.0 114 40.4
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.5e-11 72.0 120 35.8
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.0e-11 71.2 145 35.9
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 7.9e-11 70.9 122 42.6
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 7.9e-11 70.9 133 39.8
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 7.9e-11 70.9 143 37.1
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.0e-10 70.5 114 39.5
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.3e-10 70.1 149 34.2
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.8e-10 69.7 111 40.5
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.8e-10 69.7 109 40.4
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 1.8e-10 69.7 117 40.2
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-10 69.7 98 42.9
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.3e-10 69.3 108 40.7
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 2.3e-10 69.3 115 41.7
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 3.0e-10 68.9 125 42.4
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.0e-10 68.9 112 39.3
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 3.0e-10 68.9 100 44.0
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 3.9e-10 68.6 135 37.8
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 3.9e-10 68.6 136 35.3
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.9e-10 68.6 113 42.5
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 5.1e-10 68.2 109 41.3
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.1e-10 68.2 77 50.6
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.7e-10 67.8 149 33.6
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 6.7e-10 67.8 117 40.2
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 1.1e-09 67.0 138 38.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.1e-09 67.0 149 33.6
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.1e-09 67.0 91 46.2
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 1.1e-09 67.0 153 34.6
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.1e-09 67.0 125 37.6
Prupe.1G486000 Prunus persica HOM05D019695 ORTHO05D022679 1.5e-09 66.6 113 44.2
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.9e-09 66.2 64 56.2
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 1.9e-09 66.2 135 36.3
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 1.9e-09 66.2 100 48.0
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.9e-09 66.2 125 38.4
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 2.5e-09 65.9 111 39.6
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 3.3e-09 65.5 137 35.8
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 4.3e-09 65.1 125 40.0
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 4.3e-09 65.1 122 41.0
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 4.3e-09 65.1 129 39.5
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 5.6e-09 64.7 76 50.0
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 7.4e-09 64.3 109 38.5
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 7.4e-09 64.3 161 34.2
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 7.4e-09 64.3 113 35.4
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 7.4e-09 64.3 150 35.3
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 7.4e-09 64.3 154 33.8
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 9.6e-09 63.9 131 35.1
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 9.6e-09 63.9 106 42.5
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 1.3e-08 63.5 111 39.6
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 1.6e-08 63.2 128 38.3
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 1.6e-08 63.2 128 38.3
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.6e-08 63.2 74 52.7
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 1.6e-08 63.2 118 36.4
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.1e-08 62.8 112 41.1
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.1e-08 62.8 104 37.5
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 2.8e-08 62.4 112 38.4
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 2.8e-08 62.4 162 34.6
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.8e-08 62.4 65 55.4
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 2.8e-08 62.4 85 47.1
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 3.7e-08 62.0 118 35.6
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.7e-08 62.0 118 35.6
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 4.8e-08 61.6 124 36.3
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.8e-08 61.6 64 53.1
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.8e-08 61.6 111 39.6
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.8e-08 61.6 111 36.9
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.2e-08 61.2 64 53.1
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.1e-08 60.8 70 48.6
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 8.1e-08 60.8 116 37.1
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 1.1e-07 60.5 60 55.0
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.1e-07 60.5 128 36.7
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 1.4e-07 60.1 70 50.0
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.4e-07 60.1 114 34.2
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.8e-07 59.7 132 36.4
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.8e-07 59.7 122 40.2
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 2.4e-07 59.3 68 50.0
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 2.4e-07 59.3 68 50.0
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.4e-07 59.3 132 35.6
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.1e-07 58.9 125 35.2
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.0e-07 58.5 109 37.6
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 4.0e-07 58.5 85 41.2
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.9e-07 57.8 90 42.2
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 9.0e-07 57.4 70 47.1
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 9.0e-07 57.4 106 39.6
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.5e-06 56.6 109 36.7
Rhsim01G0052600 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.5e-06 56.6 102 41.2
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.6e-06 55.8 140 34.3
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 2.6e-06 55.8 69 47.8
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.6e-06 55.8 125 33.6
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.4e-06 55.5 125 34.4
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 3.4e-06 55.5 72 44.4
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 3.4e-06 55.5 124 34.7
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.5e-06 55.1 119 36.1
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.5e-06 55.1 119 36.1
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.5e-06 55.1 125 34.4
TPR.G26101 Trifolium pratense HOM05D000814 ORTHO05D001161 4.5e-06 55.1 71 45.1
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.8e-06 54.7 90 42.2
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 5.8e-06 54.7 127 35.4
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.6e-06 54.3 102 37.3
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 7.6e-06 54.3 102 37.3
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 7.6e-06 54.3 51 52.9
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 7.6e-06 54.3 117 39.3
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.0e-05 53.9 130 36.9
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.0e-05 53.9 90 41.1


User provided reference genes

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