Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 6.5e-99 364.0 175 100.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 4.3e-95 351.3 175 96.6
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.7e-94 348.2 175 96.0
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.4e-93 346.3 175 94.3
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 6.9e-93 344.0 175 94.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 4.5e-92 341.3 175 93.7
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 7.6e-92 340.5 175 93.7
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.2e-91 339.0 175 91.4
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 2.9e-91 338.6 175 91.4
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 92.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 91.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.1e-90 336.7 172 91.9
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.1e-90 336.7 174 91.4
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 4.2e-90 334.7 175 91.4
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 5.5e-90 334.3 172 92.4
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 7.1e-90 334.0 175 90.9
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 7.1e-90 334.0 175 90.3
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 7.1e-90 334.0 172 91.9
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 7.1e-90 334.0 174 90.8
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 9.3e-90 333.6 172 91.3
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 9.3e-90 333.6 174 90.2
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.2e-89 333.2 175 90.3
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.2e-89 333.2 172 89.5
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.1e-89 332.4 175 90.3
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.1e-89 332.4 175 90.3
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.1e-89 332.4 172 91.3
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 2.1e-89 332.4 175 90.3
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 2.7e-89 332.0 174 89.1
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.6e-89 331.3 175 89.7
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.6e-89 331.3 175 90.3
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 7.9e-89 330.5 173 90.8
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 7.9e-89 330.5 175 89.1
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.0e-88 330.1 175 89.7
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 88.5
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.3e-88 329.7 175 89.1
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 2.3e-88 328.9 175 90.3
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 90.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 90.7
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.9e-88 328.2 175 88.6
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 5.1e-88 327.8 175 89.1
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 5.1e-88 327.8 174 90.2
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.1e-88 327.8 175 87.4
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 5.1e-88 327.8 175 89.7
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.9e-87 325.9 174 87.4
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 2.5e-87 325.5 174 88.5
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-87 325.5 174 88.5
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 3.3e-87 325.1 172 89.5
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.3e-87 325.1 175 88.0
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 3.3e-87 325.1 175 88.6
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.3e-87 325.1 175 86.9
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 86.3
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 7.4e-87 323.9 173 87.3
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 89.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.3e-86 323.2 172 89.5
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-86 322.8 174 87.9
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 2.8e-86 322.0 173 86.1
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 2.8e-86 322.0 173 88.4
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 88.4
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 6.3e-86 320.9 174 89.7
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 6.3e-86 320.9 173 85.5
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 86.0
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 88.4
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.1e-85 320.1 172 87.2
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.1e-85 320.1 174 87.4
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.8e-85 319.3 173 85.0
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 85.0
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.4e-85 318.9 171 88.3
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 85.5
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 3.1e-85 318.5 172 85.5
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 3.1e-85 318.5 173 85.5
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.3e-85 317.8 174 86.2
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 6.9e-85 317.4 174 86.2
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 9.0e-85 317.0 172 84.9
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 9.0e-85 317.0 171 85.4
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.5e-84 316.2 175 85.7
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.5e-84 316.2 173 84.4
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.5e-84 316.2 173 84.4
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 2.0e-84 315.8 172 84.9
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.6e-84 315.5 175 85.7
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 3.4e-84 315.1 172 85.5
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 5.9e-84 314.3 172 84.3
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 5.9e-84 314.3 172 84.3
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 1.7e-83 312.8 175 84.6
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.2e-83 312.4 190 80.5
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.9e-83 312.0 175 86.3
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 5.0e-83 311.2 181 83.4
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.2e-81 306.6 226 69.9
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.6e-81 305.1 173 81.5
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 7.9e-81 303.9 173 80.9
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 7.9e-81 303.9 173 82.7
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 7.9e-81 303.9 172 83.1
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 7.9e-81 303.9 172 83.1
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 7.9e-81 303.9 172 83.1
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 7.9e-81 303.9 172 83.1
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.1e-79 300.1 175 80.6
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.5e-79 298.9 172 82.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.8e-78 295.4 159 88.1
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.8e-78 294.7 158 89.9
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 5.3e-77 291.2 165 81.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 4.4e-71 271.6 176 72.2
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 9.7e-71 270.4 174 70.7
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 8.2e-70 267.3 174 67.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.4e-69 266.5 149 85.9
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.4e-69 265.8 151 84.8
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 5.3e-69 264.6 138 93.5
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 3.5e-68 261.9 146 84.9
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.3e-67 260.0 174 66.7
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 2.9e-67 258.8 182 74.7
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 5.0e-67 258.1 185 70.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 1.7e-62 243.0 127 90.6
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 3.7e-62 241.9 126 92.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 9.1e-61 237.3 130 86.2
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 9.1e-61 237.3 130 86.2
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.2e-60 236.9 134 85.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 4.5e-60 235.0 130 86.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 7.7e-60 234.2 172 69.2
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 7.7e-60 234.2 128 87.5
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.0e-59 233.8 176 64.2
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 2.2e-59 232.6 133 85.0
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 3.8e-59 231.9 127 85.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 6.1e-57 224.6 127 82.7
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 5.2e-56 221.5 129 81.4
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 6.8e-56 221.1 147 79.6
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-54 216.9 163 68.7
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.2e-49 200.3 132 73.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 4.0e-48 195.3 128 75.0
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 7.0e-45 184.5 130 68.5
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 3.5e-44 182.2 131 72.5
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-39 166.4 92 88.0
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.3e-38 163.7 96 83.3
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-37 160.2 89 88.8
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.8e-36 154.5 92 83.7
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-35 153.7 95 82.1
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-35 152.9 103 74.8
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.9e-35 152.5 90 85.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.5e-34 150.2 80 85.0
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.5e-34 150.2 88 81.8
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.5e-34 150.2 93 76.3
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-34 149.4 90 81.1
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 4.9e-30 135.2 75 88.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.6e-28 130.2 99 62.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.5e-28 129.0 80 76.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 6.0e-28 128.3 192 35.9
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-27 126.7 77 81.8
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.4e-24 117.1 67 74.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.2e-20 104.0 89 59.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 7.8e-20 101.3 57 80.7
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 7.8e-12 74.7 37 78.4


User provided reference genes

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