Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 0.0e+00 2247.2 1128 100.0
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 0.0e+00 1997.2 1131 89.3
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 0.0e+00 1884.8 1133 83.8
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 0.0e+00 1608.6 1131 73.7
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 0.0e+00 1606.3 1134 72.0
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 0.0e+00 1585.1 1132 72.0
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 0.0e+00 1580.5 1133 72.6
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 0.0e+00 1570.8 1139 71.6
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 0.0e+00 1505.3 1135 69.4
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 0.0e+00 1466.1 1130 68.2
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 0.0e+00 1383.6 1085 69.5
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1170.2 1134 54.0
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 1162.1 1139 54.0
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 1112.1 1225 50.0
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 2.7e-307 1058.9 1136 50.8
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 3.2e-300 1035.4 1133 49.9
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 7.9e-299 1030.8 1141 49.8
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 6.3e-296 1021.1 1148 49.8
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 3.1e-295 1018.8 1149 49.7
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 2.2e-293 1012.7 1131 49.2
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 1.4e-290 1003.4 1143 48.9
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 3.7e-288 995.3 1140 48.7
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 4.8e-288 995.0 702 72.5
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.0e-285 987.3 1141 48.2
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 1.3e-285 986.9 1141 48.2
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 2.5e-284 982.6 1142 47.2
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 4.2e-284 981.9 1138 47.8
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.6e-283 979.9 1140 47.6
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 2.0e-281 973.0 1140 48.1
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 3.5e-278 962.2 1132 47.4
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 4.0e-274 948.7 1168 46.6
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 2.6e-265 919.5 1137 45.6
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 9.1e-263 911.0 1023 48.6
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 1.6e-262 910.2 1190 45.3
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 3.4e-257 892.5 1139 46.4
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 2.3e-250 869.8 971 49.3
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 3.9e-245 852.4 1236 42.1
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 6.6e-245 851.7 1097 44.7
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 1.6e-243 847.0 1130 43.0
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 1.2e-241 840.9 1157 43.0
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 8.9e-234 814.7 1134 43.3
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 3.7e-232 809.3 1144 42.6
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 2.8e-227 793.1 1130 42.6
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 3.6e-227 792.7 1144 42.0
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 1.4e-226 790.8 1131 42.7
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 4.0e-226 789.3 1117 40.9
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 2.0e-225 786.9 1143 40.6
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 1.9e-223 780.4 1128 41.8
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 3.2e-223 779.6 865 49.2
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 2.1e-222 776.9 1134 42.2
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 6.0e-222 775.4 1138 41.6
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 3.6e-219 766.1 1119 41.2
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 1.1e-218 764.6 1119 40.5
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 4.4e-217 759.2 1174 39.8
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 2.4e-215 753.4 1139 41.0
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 1.9e-212 743.8 806 49.4
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 6.9e-210 735.3 1134 41.3
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 1.3e-208 731.1 946 44.1
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 1.5e-201 707.6 1011 41.8
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 2.7e-198 696.8 1133 38.9
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.0e-193 680.6 945 41.8
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 2.5e-191 673.7 1007 41.2
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 4.3e-188 662.9 910 42.9
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 4.5e-185 652.9 830 45.1
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.9e-175 620.9 689 49.3
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 1.4e-173 614.8 842 43.7
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 5.0e-168 596.3 1134 36.4
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.2e-166 591.7 1135 36.2
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.8e-162 577.8 866 39.8
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 4.2e-159 566.6 1035 35.3
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 4.4e-148 530.0 1122 33.0
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 6.5e-144 516.2 1214 31.0
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 1.8e-130 471.5 329 73.3
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 5.6e-127 459.9 1144 31.4
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 2.1e-126 458.0 869 35.7
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 2.7e-105 387.9 401 53.1
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 6.9e-101 373.2 298 64.1
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 1.5e-87 328.9 833 29.2
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 4.2e-82 310.8 308 54.2
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 5.7e-71 273.9 254 57.9
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 3.4e-68 264.6 273 50.9
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 6.3e-62 243.8 430 36.0
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.4e-61 242.7 215 60.9
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 5.9e-60 237.3 203 56.2
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 7.2e-58 230.3 422 34.8
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 4.7e-57 227.6 1087 24.3
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 1.4e-56 226.1 229 55.5
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 5.7e-55 220.7 265 49.8
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 2.0e-44 185.7 436 32.8
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 7.7e-44 183.7 423 30.7
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-39 169.9 155 54.8
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-39 169.9 155 54.8
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 1.7e-35 156.0 124 63.7
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 6.1e-33 147.5 986 22.0
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 3.0e-32 145.2 144 50.0
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 3.4e-31 141.7 155 51.0
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 1.8e-29 136.0 218 40.4
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 3.1e-29 135.2 150 48.7
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 3.6e-25 121.7 85 65.9
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 1.7e-22 112.8 119 56.3
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.6e-12 79.7 85 51.8
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.1e-09 69.3 252 22.6


User provided reference genes

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