Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 9.2e-56 219.9 107 100.0
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 4.0e-51 204.5 102 95.1
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 8.9e-43 176.8 103 87.4
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 3.6e-36 154.8 106 73.6
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 1.8e-35 152.5 101 77.2
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 1.5e-34 149.4 105 76.2
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 2.4e-32 142.1 107 68.2
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 1.2e-31 139.8 107 62.6
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 2.1e-31 139.0 112 65.2
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 1.5e-26 122.9 95 61.1
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 2.0e-26 122.5 93 63.4
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 4.5e-26 121.3 97 63.9
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 1.3e-25 119.8 93 63.4
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.4e-24 116.3 95 58.9
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 9.3e-24 113.6 96 57.3
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 2.1e-23 112.5 102 55.9
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 3.5e-23 111.7 92 57.6
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 1.3e-22 109.8 102 55.9
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 3.0e-22 108.6 93 60.2
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 1.5e-21 106.3 100 53.0
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 3.3e-21 105.1 94 53.2
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.3e-21 104.8 90 56.7
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.3e-21 104.8 90 56.7
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 4.3e-21 104.8 90 56.7
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 5.6e-21 104.4 101 52.5
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 3.7e-20 101.7 94 53.2
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 4.8e-20 101.3 92 54.3
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 6.2e-20 100.9 100 53.0
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 6.2e-20 100.9 87 58.6
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 6.2e-20 100.9 95 51.6
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 8.1e-20 100.5 97 53.6
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 1.1e-19 100.1 95 49.5
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 1.8e-19 99.4 105 54.3
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 3.1e-19 98.6 102 52.9
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 4.0e-19 98.2 95 51.6
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 5.3e-19 97.8 105 49.5
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 6.9e-19 97.4 95 50.5
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 9.0e-19 97.1 98 49.0
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 9.0e-19 97.1 61 70.5
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 9.0e-19 97.1 93 49.5
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 1.5e-18 96.3 94 54.3
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 5.8e-18 94.4 96 47.9
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 2.2e-17 92.4 105 49.5
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 3.8e-17 91.7 100 47.0
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 4.9e-17 91.3 92 48.9
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.9e-17 91.3 89 53.9
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 6.4e-17 90.9 100 46.0
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 8.4e-17 90.5 102 47.1
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 8.4e-17 90.5 98 45.9
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 8.4e-17 90.5 89 49.4
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 8.4e-17 90.5 89 49.4
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 8.4e-17 90.5 89 53.9
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 8.4e-17 90.5 89 53.9
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 8.4e-17 90.5 106 47.2
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 1.1e-16 90.1 104 46.2
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 1.1e-16 90.1 96 49.0
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-16 90.1 96 49.0
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-16 90.1 96 49.0
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-16 90.1 96 49.0
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.4e-16 89.7 95 45.3
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 1.9e-16 89.4 89 46.1
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.9e-16 89.4 89 46.1
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 2.4e-16 89.0 88 54.5
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.4e-16 89.0 96 47.9
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 2.4e-16 89.0 97 48.5
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.2e-16 88.6 89 46.1
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 4.2e-16 88.2 89 43.8
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 4.2e-16 88.2 61 62.3
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 4.2e-16 88.2 102 47.1
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 4.2e-16 88.2 106 44.3
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 5.5e-16 87.8 90 46.7
Psat4g038120 Pisum sativum HOM05D018984 ORTHO05D020974 7.1e-16 87.4 82 53.7
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 7.1e-16 87.4 93 50.5
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 9.3e-16 87.0 100 44.0
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.6e-15 86.3 76 50.0
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 2.7e-15 85.5 100 46.0
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 3.5e-15 85.1 92 44.6
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 3.5e-15 85.1 89 49.4
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 4.6e-15 84.7 94 44.7
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 4.6e-15 84.7 96 45.8
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 6.0e-15 84.3 97 48.5
CSS0018376 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.0e-14 83.6 104 46.2
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 1.3e-14 83.2 63 58.7
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 1.3e-14 83.2 100 48.0
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 1.3e-14 83.2 99 42.4
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 1.3e-14 83.2 100 45.0
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 1.8e-14 82.8 98 42.9
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.8e-14 82.8 91 48.4
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 2.3e-14 82.4 92 43.5
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.9e-14 81.6 104 44.2
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.9e-14 81.6 104 40.4
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 5.1e-14 81.3 105 42.9
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 5.1e-14 81.3 98 46.9
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 5.1e-14 81.3 67 56.7
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 5.1e-14 81.3 63 54.0
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 5.1e-14 81.3 72 51.4
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 5.1e-14 81.3 100 45.0
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 6.7e-14 80.9 93 47.3
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 8.7e-14 80.5 97 42.3
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 1.1e-13 80.1 90 44.4
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 1.1e-13 80.1 76 47.4
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 1.9e-13 79.3 90 42.2
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 2.5e-13 79.0 115 39.1
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 3.3e-13 78.6 61 52.5
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 3.3e-13 78.6 100 38.0
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 4.3e-13 78.2 69 50.7
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 4.3e-13 78.2 99 43.4
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 4.3e-13 78.2 98 39.8
Ciclev10010462m.g Citrus clementina HOM05D004379 ORTHO05D005186 5.6e-13 77.8 76 48.7
DCAR_025508 Daucus carota HOM05D004379 ORTHO05D005186 5.6e-13 77.8 70 52.9
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 5.6e-13 77.8 100 46.0
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 5.6e-13 77.8 97 39.2
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 7.4e-13 77.4 93 40.9
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 7.4e-13 77.4 93 40.9
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 7.4e-13 77.4 103 40.8
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 7.4e-13 77.4 116 37.9
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 7.4e-13 77.4 103 37.9
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.3e-12 76.6 115 38.3
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.6e-12 76.3 116 37.1
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.8e-12 75.5 70 52.9
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.8e-12 75.5 104 42.3
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 3.7e-12 75.1 95 38.9
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 4.8e-12 74.7 115 39.1
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 4.8e-12 74.7 100 42.0
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 6.2e-12 74.3 94 38.3
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 8.2e-12 73.9 95 38.9
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 8.2e-12 73.9 99 43.4
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 1.4e-11 73.2 93 44.1
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 1.4e-11 73.2 102 32.4
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 1.8e-11 72.8 108 39.8
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 1.8e-11 72.8 94 42.6
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 2.4e-11 72.4 96 43.8
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 3.1e-11 72.0 69 49.3
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 6.9e-11 70.9 94 40.4
Nitab4.5_0007034g0030 Nicotiana tabacum HOM05D001011 ORTHO05D000851 1.5e-10 69.7 56 51.8
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 2.0e-10 69.3 120 38.3
Sopen08g006200 Solanum pennellii HOM05D004379 ORTHO05D005186 2.6e-10 68.9 86 46.5
Nitab4.5_0000209g0140 Nicotiana tabacum HOM05D004379 ORTHO05D005186 3.4e-10 68.6 90 38.9
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 3.4e-10 68.6 86 46.5
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 5.8e-10 67.8 66 48.5
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 5.8e-10 67.8 56 53.6
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 1.0e-09 67.0 59 49.2
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 1.3e-09 66.6 106 34.9
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.7e-09 66.2 100 38.0
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.7e-09 66.2 63 44.4
PGSC0003DMG401021955 Solanum tuberosum HOM05D004379 ORTHO05D005186 3.8e-09 65.1 96 38.5
TWI75G1822 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 3.8e-09 65.1 76 47.4
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 4.9e-09 64.7 88 40.9
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 2.5e-08 62.4 101 33.7
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 3.2e-08 62.0 92 37.0
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 4.2e-08 61.6 94 35.1
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 1.2e-07 60.1 100 32.0
Duzib264G0507 Durio zibethinus HOM05D001149 ORTHO05D000970 3.5e-07 58.5 95 41.1
PSO339G4098 Papaver somniferum HOM05D004379 ORTHO05D005186 3.5e-07 58.5 94 36.2
Peaxi162Scf00332g00733 Petunia axillaris HOM05D004379 ORTHO05D005186 7.9e-07 57.4 61 47.5
A02p23810 Brassica napus HOM05D004379 ORTHO05D005186 1.8e-06 56.2 95 37.9
BraA02t07372Z Brassica rapa HOM05D004379 ORTHO05D005186 1.8e-06 56.2 95 37.9
Solyc11g009040.3 Solanum lycopersicum HOM05D001149 ORTHO05D000970 1.8e-06 56.2 121 34.7
C02p37550 Brassica napus HOM05D004379 ORTHO05D005186 2.3e-06 55.8 94 37.2
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 3.0e-06 55.5 63 44.4
BolC2t09767H Brassica oleracea HOM05D004379 ORTHO05D005186 3.0e-06 55.5 62 45.2
Medtr3g110550 Medicago truncatula HOM05D001149 ORTHO05D000970 3.0e-06 55.5 110 34.5
DCAR_014212 Daucus carota HOM05D001149 ORTHO05D000970 3.9e-06 55.1 124 33.9
Nitab4.5_0005728g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 3.9e-06 55.1 60 46.7
Psat5g019920 Pisum sativum HOM05D001149 ORTHO05D000970 3.9e-06 55.1 110 35.5
Psat5g090560 Pisum sativum HOM05D001149 ORTHO05D000970 5.1e-06 54.7 114 35.1
Peaxi162Scf00295g01127 Petunia axillaris HOM05D001149 ORTHO05D000970 6.7e-06 54.3 108 35.2
Aqoxy6G00752 Aquilegia oxysepala HOM05D001149 ORTHO05D000970 8.7e-06 53.9 108 28.7


User provided reference genes

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