Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 5.4e-50 200.7 100 100.0
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 1.7e-43 179.1 101 90.1
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 2.3e-40 168.7 100 85.0
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 3.0e-40 168.3 100 82.0
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 3.3e-31 138.3 100 71.0
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 7.3e-31 137.1 101 69.3
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 7.3e-31 137.1 101 69.3
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 6.2e-30 134.0 100 69.0
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 7.6e-28 127.1 100 66.0
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 9.9e-28 126.7 102 62.7
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 1.3e-27 126.3 102 63.7
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 2.2e-27 125.6 102 62.7
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 4.2e-26 121.3 100 63.0
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 9.3e-26 120.2 100 62.0
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 1.6e-25 119.4 99 60.6
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 2.1e-25 119.0 99 60.6
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 3.5e-25 118.2 99 61.6
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.3e-24 116.3 95 60.0
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 2.3e-24 115.5 99 60.6
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 6.6e-24 114.0 93 62.4
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 6.6e-24 114.0 99 59.6
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 8.7e-24 113.6 94 61.7
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 1.1e-23 113.2 106 55.7
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 1.5e-23 112.8 89 62.9
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.5e-23 112.8 95 57.9
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 3.3e-23 111.7 95 57.9
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 4.3e-23 111.3 95 60.0
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 5.6e-23 110.9 95 54.7
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 7.3e-23 110.5 97 58.8
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.6e-22 109.4 96 60.4
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 4.8e-22 107.8 96 57.3
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 4.8e-22 107.8 96 57.3
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 4.8e-22 107.8 95 58.9
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 4.8e-22 107.8 93 60.2
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 6.2e-22 107.5 98 60.2
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 6.2e-22 107.5 97 55.7
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 6.2e-22 107.5 96 57.3
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 8.1e-22 107.1 96 60.4
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.1e-21 106.7 95 55.8
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 3.1e-21 105.1 95 58.9
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 4.0e-21 104.8 95 57.9
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 9.0e-21 103.6 97 56.7
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 9.0e-21 103.6 97 55.7
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 9.0e-21 103.6 95 56.8
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 9.0e-21 103.6 105 53.3
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 1.2e-20 103.2 102 53.9
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 1.5e-20 102.8 95 56.8
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 1.5e-20 102.8 101 54.5
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.6e-20 102.1 93 57.0
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.4e-20 101.7 97 56.7
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 3.4e-20 101.7 99 53.5
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 3.4e-20 101.7 102 52.0
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 3.4e-20 101.7 102 52.0
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 4.5e-20 101.3 97 55.7
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 7.6e-20 100.5 99 58.6
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 9.9e-20 100.1 96 54.2
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.3e-19 99.8 99 51.5
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 2.2e-19 99.0 97 56.7
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.9e-19 98.6 101 50.5
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 3.8e-19 98.2 99 52.5
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 4.9e-19 97.8 93 60.2
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 6.4e-19 97.4 85 60.0
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 1.1e-18 96.7 101 49.5
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 1.1e-18 96.7 99 51.5
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 1.4e-18 96.3 100 54.0
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 1.9e-18 95.9 95 52.6
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.9e-18 95.9 79 62.0
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.9e-18 95.9 97 52.6
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 3.2e-18 95.1 94 56.4
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 3.2e-18 95.1 97 53.6
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 4.2e-18 94.7 95 51.6
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 5.4e-18 94.4 97 51.5
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 7.1e-18 94.0 103 53.4
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 9.3e-18 93.6 79 60.8
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 1.2e-17 93.2 97 51.5
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 1.2e-17 93.2 97 51.5
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.6e-17 92.8 97 51.5
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 2.1e-17 92.4 94 54.3
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 4.6e-17 91.3 97 50.5
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 6.0e-17 90.9 95 50.5
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.3e-16 89.7 95 49.5
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 3.0e-16 88.6 85 56.5
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 3.0e-16 88.6 98 49.0
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 3.0e-16 88.6 97 49.5
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 3.0e-16 88.6 97 49.5
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 3.0e-16 88.6 97 48.5
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 5.1e-16 87.8 148 38.5
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 5.1e-16 87.8 50 82.0
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 5.1e-16 87.8 93 50.5
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 6.7e-16 87.4 125 41.6
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 6.7e-16 87.4 103 45.6
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 6.7e-16 87.4 57 77.2
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 8.7e-16 87.0 102 48.0
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 1.1e-15 86.7 102 48.0
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 3.3e-15 85.1 97 47.4
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 4.3e-15 84.7 64 64.1
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 5.6e-15 84.3 84 52.4
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 5.6e-15 84.3 97 49.5
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 7.4e-15 84.0 98 49.0
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 7.4e-15 84.0 97 49.5
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 9.6e-15 83.6 97 49.5
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 1.3e-14 83.2 98 49.0
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 1.6e-14 82.8 94 47.9
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 2.1e-14 82.4 91 51.6
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 2.1e-14 82.4 107 45.8
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.8e-14 82.0 97 47.4
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 4.8e-14 81.3 70 60.0
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 8.1e-14 80.5 52 69.2
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.4e-13 79.0 54 66.7
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 3.4e-12 75.1 45 75.6
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 7.6e-12 73.9 104 40.4
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 1.3e-11 73.2 97 42.3
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 2.9e-11 72.0 103 41.7
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 1.1e-10 70.1 98 44.9
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 2.5e-10 68.9 103 35.9
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 3.2e-10 68.6 41 75.6
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 9.3e-10 67.0 51 54.9
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 1.2e-09 66.6 96 38.5
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 1.6e-09 66.2 88 43.2
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 2.7e-09 65.5 43 62.8
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.3e-08 63.2 67 52.2
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 1.8e-08 62.8 43 60.5
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 2.3e-08 62.4 63 57.1
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 3.0e-08 62.0 60 50.0
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 8.7e-08 60.5 55 52.7
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 2.5e-07 58.9 38 65.8
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 2.5e-07 58.9 38 65.8
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 2.5e-07 58.9 44 61.4
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 5.7e-07 57.8 44 56.8
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 7.4e-07 57.4 38 68.4
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 1.3e-06 56.6 38 63.2
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 1.3e-06 56.6 38 65.8
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 1.3e-06 56.6 43 58.1
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 1.3e-06 56.6 43 58.1
Gohir.A09G245566 Gossypium hirsutum HOM05D019283 ORTHO05D005776 3.7e-06 55.1 38 63.2
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 6.2e-06 54.3 36 66.7


User provided reference genes

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