Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.0e-56 223.4 133 100.0
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.1e-45 186.8 134 70.1
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 5.3e-45 184.5 133 72.2
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 1.5e-44 183.0 133 82.0
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 1.0e-43 180.3 134 68.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 3.2e-42 175.3 134 70.9
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 5.5e-42 174.5 134 70.1
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 2.0e-39 166.0 133 67.7
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 8.2e-38 160.6 133 71.4
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 8.2e-38 160.6 134 61.9
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.6e-36 156.4 134 68.7
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 2.0e-36 156.0 133 65.4
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 4.5e-36 154.8 133 75.2
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 7.7e-36 154.1 132 58.3
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.2e-35 152.5 133 69.9
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 1.5e-34 149.8 144 58.3
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 2.5e-34 149.1 135 74.8
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.6e-33 146.4 133 58.6
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.1e-33 146.0 133 54.1
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.1e-33 146.0 133 52.6
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.1e-33 146.0 133 52.6
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 2.7e-33 145.6 135 70.4
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 4.7e-33 144.8 137 54.7
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 1.4e-32 143.3 133 54.1
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.3e-32 142.5 131 58.0
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 4.0e-32 141.7 133 53.4
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.2e-31 140.2 134 53.0
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 2.0e-31 139.4 133 54.1
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.0e-31 139.4 133 63.2
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 3.4e-31 138.7 134 63.4
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 4.4e-31 138.3 131 56.5
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 7.5e-31 137.5 133 55.6
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.3e-30 136.7 130 68.5
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.7e-30 136.3 128 61.7
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.2e-30 136.0 135 61.5
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 4.8e-30 134.8 133 60.9
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 4.8e-30 134.8 133 65.4
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 8.3e-30 134.0 136 58.8
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.3e-30 134.0 133 57.9
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.1e-29 133.7 133 60.2
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 1.8e-29 132.9 133 51.1
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.8e-29 132.9 134 59.0
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 4.1e-29 131.7 133 61.7
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 5.3e-29 131.3 130 70.8
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.3e-29 131.3 130 70.8
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 7.0e-29 131.0 106 69.8
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 7.0e-29 131.0 106 69.8
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.0e-29 131.0 133 52.6
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.0e-29 131.0 133 52.6
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.1e-29 130.6 130 70.8
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.6e-28 129.8 133 68.4
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 2.0e-28 129.4 138 51.4
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.0e-28 129.4 133 54.1
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 2.7e-28 129.0 134 50.7
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.9e-27 125.6 112 58.0
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 3.8e-27 125.2 129 61.2
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 3.8e-27 125.2 133 59.4
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 5.0e-27 124.8 135 57.8
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 8.5e-27 124.0 138 54.3
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.1e-26 123.6 135 50.4
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.1e-26 123.6 135 54.1
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 1.5e-26 123.2 133 60.2
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 9.4e-26 120.6 145 44.8
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 1.2e-25 120.2 131 66.4
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.7e-25 118.2 133 53.4
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 4.7e-25 118.2 133 51.9
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 6.1e-25 117.9 134 53.0
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 6.1e-25 117.9 133 55.6
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 6.1e-25 117.9 135 56.3
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 1.8e-24 116.3 135 58.5
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.3e-24 115.9 128 53.1
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.0e-24 115.5 135 48.9
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 3.0e-24 115.5 135 57.8
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.2e-23 113.6 133 52.6
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.6e-23 112.5 151 50.3
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 3.4e-23 112.1 143 44.1
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 5.7e-23 111.3 132 46.2
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 9.8e-23 110.5 133 59.4
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 1.3e-22 110.2 133 43.6
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 2.8e-22 109.0 137 55.5
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.7e-22 108.6 137 55.5
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.8e-21 106.3 136 46.3
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 1.8e-21 106.3 133 51.9
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 1.8e-21 106.3 139 48.9
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 5.4e-21 104.8 133 57.1
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.2e-20 103.6 113 48.7
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 1.2e-20 103.6 135 47.4
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 2.0e-20 102.8 140 42.1
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.0e-20 102.8 125 58.4
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 2.7e-20 102.4 139 54.7
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 1.3e-19 100.1 105 59.0
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 1.3e-19 100.1 134 59.7
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 2.3e-19 99.4 140 58.6
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 2.3e-19 99.4 137 57.7
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.3e-19 99.4 110 62.7
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 2.9e-19 99.0 131 41.2
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 3.8e-19 98.6 140 54.3
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 3.8e-19 98.6 96 50.0
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 6.6e-19 97.8 140 57.9
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 6.6e-19 97.8 140 54.3
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 6.6e-19 97.8 140 57.9
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 8.6e-19 97.4 140 56.4
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.1e-18 97.1 140 50.7
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 1.5e-18 96.7 126 60.3
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.5e-18 96.7 146 40.4
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.5e-18 96.7 130 55.4
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.5e-18 96.7 130 55.4
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 1.5e-18 96.7 140 52.9
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.9e-18 96.3 112 55.4
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.9e-18 96.3 154 39.0
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.5e-18 95.9 125 54.4
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 3.3e-18 95.5 133 42.9
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 3.3e-18 95.5 131 56.5
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 5.5e-18 94.7 106 44.3
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 9.5e-18 94.0 136 54.4
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 9.5e-18 94.0 133 52.6
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 1.2e-17 93.6 141 46.1
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.6e-17 93.2 139 54.7
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 1.6e-17 93.2 86 72.1
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.1e-17 92.8 112 59.8
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 2.1e-17 92.8 131 44.3
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 2.8e-17 92.4 133 56.4
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.6e-17 92.0 134 41.0
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.6e-17 92.0 137 46.0
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 3.6e-17 92.0 94 76.6
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.7e-17 91.7 134 41.0
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.7e-17 91.7 123 52.0
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 8.0e-17 90.9 131 55.0
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.4e-16 90.1 132 55.3
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.4e-16 90.1 132 55.3
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.4e-16 90.1 131 55.7
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 1.4e-16 90.1 135 45.2
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.8e-16 89.7 87 49.4
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 2.3e-16 89.4 90 71.1
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 4.0e-16 88.6 126 58.7
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 5.2e-16 88.2 132 56.1
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.8e-16 87.8 88 55.7
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 8.9e-16 87.4 131 51.9
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 8.9e-16 87.4 135 44.4
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.2e-15 87.0 136 47.1
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.5e-15 86.7 97 52.6
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.5e-15 86.7 86 59.3
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.5e-15 86.7 109 58.7
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.5e-15 86.7 92 68.5
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 3.4e-15 85.5 142 50.0
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 4.4e-15 85.1 139 43.2
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 5.7e-15 84.7 135 45.9
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 5.7e-15 84.7 145 48.3
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 7.5e-15 84.3 149 38.9
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 7.5e-15 84.3 146 47.9
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 7.5e-15 84.3 89 51.7
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 9.8e-15 84.0 88 54.5
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.3e-14 83.6 88 61.4
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.7e-14 83.2 130 44.6
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.7e-14 83.2 101 55.4
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 2.2e-14 82.8 95 66.3
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.8e-14 82.4 104 53.8
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 2.8e-14 82.4 128 42.2
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.7e-14 82.0 60 80.0
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 3.7e-14 82.0 76 76.3
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 4.9e-14 81.6 68 57.4
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 4.9e-14 81.6 72 62.5
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.4e-13 80.1 145 51.7
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 2.4e-13 79.3 106 41.5
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 4.1e-13 78.6 88 51.1
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 5.4e-13 78.2 145 46.9
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 2.0e-12 76.3 61 72.1
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.0e-12 76.3 68 55.9
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.7e-12 75.9 90 51.1
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.7e-12 75.9 83 60.2
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-11 73.6 107 47.7
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.7e-11 73.2 90 45.6
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 1.7e-11 73.2 76 44.7
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.7e-11 73.2 69 60.9
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 3.9e-11 72.0 70 47.1
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 5.0e-11 71.6 106 44.3
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.0e-08 62.0 93 48.4
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.2e-08 61.6 50 62.0
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.9e-08 60.8 66 50.0
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 5.8e-07 58.2 67 43.3
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.2e-06 56.2 75 42.7
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.9e-06 55.8 75 42.7
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.4e-06 54.7 39 64.1


User provided reference genes

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