Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G157800 Phaseolus vulgaris HOM05D003067 ORTHO05D007251 3.3e-95 351.7 176 100.0
VMungo1215G2568 Vigna mungo HOM05D003067 ORTHO05D007251 2.2e-91 339.0 174 95.4
Glyma.13G154800 Glycine max HOM05D003067 ORTHO05D007251 7.4e-87 323.9 176 90.3
Ca_21111_v3 Cicer arietinum L. HOM05D003067 ORTHO05D007251 1.3e-83 313.2 176 85.2
PGR142G0687 Punica granatum HOM05D003067 ORTHO05D007251 1.7e-83 312.8 176 85.2
Duzib187G1913 Durio zibethinus HOM05D003067 ORTHO05D007251 1.1e-82 310.1 176 85.8
Gohir.D10G035400 Gossypium hirsutum HOM05D003067 ORTHO05D007251 1.2e-81 306.6 176 85.2
Gorai.011G037200 Gossypium raimondii HOM05D003067 ORTHO05D007251 1.2e-81 306.6 176 85.2
Thecc.09G033800 Theobroma cacao HOM05D003067 ORTHO05D007251 1.2e-81 306.6 176 85.2
TPR.G39220 Trifolium pratense HOM05D003067 ORTHO05D007251 1.2e-81 306.6 171 85.4
AL2G12000 Arabidopsis lyrata HOM05D003067 ORTHO05D007251 2.7e-81 305.4 176 84.7
COL.COLO4_18775 Corchorus olitorius HOM05D003067 ORTHO05D007251 2.7e-81 305.4 176 83.5
ClCG10G005110 Citrullus lanatus HOM05D003067 ORTHO05D007251 3.6e-81 305.1 175 82.9
THA.LOC104822364 Tarenaya hassleriana HOM05D003067 ORTHO05D007251 3.6e-81 305.1 176 83.0
AT1G63270 Arabidopsis thaliana HOM05D003067 ORTHO05D007251 6.1e-81 304.3 176 84.1
Carub.0002s0155 Capsella rubella HOM05D003067 ORTHO05D007251 6.1e-81 304.3 176 84.1
CsaV3_3G004790 Cucumis sativus L. HOM05D003067 ORTHO05D007251 8.0e-81 303.9 176 82.4
Thhalv10023673m.g Eutrema salsugineum HOM05D003067 ORTHO05D007251 8.0e-81 303.9 176 84.1
Sp2g01250 Schrenkiella parvula HOM05D003067 ORTHO05D007251 8.0e-81 303.9 176 84.1
AL2G11880 Arabidopsis lyrata HOM05D000318 ORTHO05D007251 1.0e-80 303.5 175 84.0
AL2G11970 Arabidopsis lyrata HOM05D000318 ORTHO05D007251 1.0e-80 303.5 175 84.0
Sabra18G0093200 Salix brachista HOM05D003067 ORTHO05D007251 1.0e-80 303.5 176 83.0
BcaC04g22483 Brassica carinata HOM05D003067 ORTHO05D007251 1.4e-80 303.1 176 83.0
C09p18790 Brassica napus HOM05D003067 ORTHO05D007251 1.4e-80 303.1 176 83.0
BolC9t54781H Brassica oleracea HOM05D003067 ORTHO05D007251 1.4e-80 303.1 176 83.0
Ciclev10009382m.g Citrus clementina HOM05D003067 ORTHO05D007251 1.4e-80 303.1 176 84.1
Eucgr.C00365 Eucalyptus grandis HOM05D003067 ORTHO05D007251 1.4e-80 303.1 174 83.9
Gorai.010G111900 Gossypium raimondii HOM05D003067 ORTHO05D007251 1.8e-80 302.8 176 84.1
TWI34G0114 Tripterygium wilfordii HOM05D003067 ORTHO05D007251 1.8e-80 302.8 176 83.0
Cpa.g.sc46.128 Carica papaya HOM05D003067 ORTHO05D007251 2.3e-80 302.4 174 83.3
Psat4g008800 Pisum sativum HOM05D003067 ORTHO05D007251 2.3e-80 302.4 176 84.7
Sed0009590 Sechium edule HOM05D003067 ORTHO05D007251 2.3e-80 302.4 176 82.4
CARHR048140 Cardamine hirsuta HOM05D003067 ORTHO05D007251 3.0e-80 302.0 176 83.5
Potri.018G110200 Populus trichocarpa HOM05D003067 ORTHO05D007251 3.0e-80 302.0 176 82.4
Aa31LG2G710 Aethionema arabicum HOM05D000318 ORTHO05D007251 4.0e-80 301.6 175 83.4
Gohir.A10G034666 Gossypium hirsutum HOM05D003067 ORTHO05D007251 4.0e-80 301.6 176 83.5
Manes.14G111800 Manihot esculenta HOM05D003067 ORTHO05D007251 4.0e-80 301.6 176 83.0
QL02p092650 Quercus lobata HOM05D003067 ORTHO05D007251 4.0e-80 301.6 173 83.8
Atru.chr7.135 Acer truncatum HOM05D003067 ORTHO05D007251 6.7e-80 300.8 176 83.0
A09p15540 Brassica napus HOM05D003067 ORTHO05D007251 6.7e-80 300.8 176 82.4
BraA09t37194Z Brassica rapa HOM05D003067 ORTHO05D007251 6.7e-80 300.8 176 82.4
Cc06_g15250 Coffea canephora HOM05D003067 ORTHO05D007251 6.7e-80 300.8 176 81.2
Lj4g0016734 Lotus japonicus HOM05D003067 ORTHO05D007251 6.7e-80 300.8 173 84.4
BcaB07g31398 Brassica carinata HOM05D003067 ORTHO05D007251 8.8e-80 300.4 176 83.0
CiPaw.15G174100 Carya illinoinensis HOM05D003067 ORTHO05D007251 8.8e-80 300.4 174 82.8
MELO3C014177.2 Cucumis melo HOM05D003067 ORTHO05D007251 1.2e-79 300.1 176 80.7
EL10Ac9g22772 Beta vulgaris HOM05D003067 ORTHO05D007251 1.5e-79 299.7 176 81.2
Haze_19236 Corylus avellana HOM05D003067 ORTHO05D007251 1.5e-79 299.7 173 82.7
EL10Ac3g05662 Beta vulgaris HOM05D003067 ORTHO05D007251 2.6e-79 298.9 176 81.2
DCAR_014818 Daucus carota HOM05D003067 ORTHO05D007251 2.6e-79 298.9 173 82.1
Lj7P455T22 Lonicera japonica HOM05D003067 ORTHO05D007251 2.6e-79 298.9 171 83.0
Medtr4g131330 Medicago truncatula HOM05D003067 ORTHO05D007251 2.6e-79 298.9 176 83.5
Prupe.7G259900 Prunus persica HOM05D003067 ORTHO05D007251 2.6e-79 298.9 173 83.2
Hma1.2p1_0222F.1_g093300 Hydrangea macrophylla HOM05D003067 ORTHO05D007251 3.3e-79 298.5 171 84.2
Rhsim01G0045000 Rhododendron simsii HOM05D003067 ORTHO05D007251 3.3e-79 298.5 173 83.8
CSS0017292 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D007251 4.4e-79 298.1 172 83.7
CSS0043589 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D007251 4.4e-79 298.1 172 83.7
Dinv42885 Davidia involucrata HOM05D003067 ORTHO05D007251 5.7e-79 297.7 173 82.7
MD02G1010200 Malus domestica HOM05D003067 ORTHO05D007251 7.5e-79 297.4 173 82.7
Dinv41399 Davidia involucrata HOM05D003067 ORTHO05D007251 9.7e-79 297.0 172 84.3
Dinv43215 Davidia involucrata HOM05D003067 ORTHO05D007251 9.7e-79 297.0 172 83.1
AUR62035264 Chenopodium quinoa HOM05D003067 ORTHO05D007251 1.7e-78 296.2 176 79.5
RhsimUnG0172000 Rhododendron simsii HOM05D003067 ORTHO05D007251 1.7e-78 296.2 171 84.2
SHI31898 Sapria himalayana HOM05D003067 ORTHO05D007251 1.7e-78 296.2 176 80.1
Hund26544 Selenicereus undatus HOM05D003067 ORTHO05D007251 4.8e-78 294.7 174 79.9
FvH4_1g01200 Fragaria vesca HOM05D003067 ORTHO05D007251 1.4e-77 293.1 173 82.1
FAN23G0234 Fragaria x ananassa HOM05D003067 ORTHO05D007251 1.4e-77 293.1 173 82.1
FAN28G1587 Fragaria x ananassa HOM05D003067 ORTHO05D007251 1.4e-77 293.1 173 82.1
RcHm_v2.0_Chr2g0086001 Rosa chinensis HOM05D003067 ORTHO05D007251 1.4e-77 293.1 173 82.1
Peaxi162Scf00108g00073 Petunia axillaris HOM05D003067 ORTHO05D007251 2.4e-77 292.4 176 80.1
Solyc12g010220.3 Solanum lycopersicum HOM05D003067 ORTHO05D007251 2.4e-77 292.4 176 80.1
FAN19G2760 Fragaria x ananassa HOM05D003067 ORTHO05D007251 3.1e-77 292.0 173 81.5
Sopen12g005110 Solanum pennellii HOM05D003067 ORTHO05D007251 3.1e-77 292.0 176 80.1
CAN.G551.29 Capsicum annuum HOM05D003067 ORTHO05D007251 5.3e-77 291.2 176 79.5
PGSC0003DMG400007895 Solanum tuberosum HOM05D003067 ORTHO05D007251 5.3e-77 291.2 176 79.5
Migut.C01262 Erythranthe guttata HOM05D003067 ORTHO05D007251 7.0e-77 290.8 171 80.1
SGA_v2.0_scaffold223G42827 Striga asiatica HOM05D003067 ORTHO05D007251 9.1e-77 290.4 164 84.1
Nitab4.5_0001478g0100 Nicotiana tabacum HOM05D003067 ORTHO05D007251 1.2e-76 290.0 176 79.0
Nitab4.5_0002315g0050 Nicotiana tabacum HOM05D003067 ORTHO05D007251 1.2e-76 290.0 176 79.0
GSVIVG01033294001 Vitis vinifera HOM05D003067 ORTHO05D007251 1.2e-76 290.0 173 78.6
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 3.5e-76 288.5 166 83.1
Oeu021254.1 Olea europaea HOM05D003067 ORTHO05D007251 4.5e-76 288.1 171 80.1
MSTRG.11189 Avicennia marina HOM05D003067 ORTHO05D007251 7.7e-76 287.3 171 81.3
FvH4_1g01210 Fragaria vesca HOM05D003067 ORTHO05D007251 7.7e-76 287.3 173 80.9
Lalb_Chr19g0125941 Lupinus albus HOM05D003067 ORTHO05D007251 2.2e-75 285.8 176 79.0
Aqoxy5G03664 Aquilegia oxysepala HOM05D003067 ORTHO05D007251 2.9e-75 285.4 170 81.8
Peaxi162Scf00177g00916 Petunia axillaris HOM05D003067 ORTHO05D007251 3.8e-75 285.0 176 79.5
Nn4g26426 Nelumbo nucifera HOM05D003067 ORTHO05D007251 8.5e-75 283.9 168 82.7
Sc18g0006940 Simmondsia chinensis HOM05D003067 ORTHO05D007251 1.5e-74 283.1 177 78.0
Aqoxy2G01213 Aquilegia oxysepala HOM05D003067 ORTHO05D007251 2.5e-74 282.3 170 80.6
unitig_32.g11754 Utricularia gibba HOM05D003067 ORTHO05D007251 7.2e-74 280.8 171 74.9
Actinidia04284 Actinidia chinensis HOM05D003067 ORTHO05D007251 9.4e-74 280.4 173 78.6
HanXRQChr10g0314651 Helianthus annuus HOM05D003067 ORTHO05D007251 1.2e-73 280.0 169 77.5
ECA234G4787 Erigeron canadensis HOM05D003067 ORTHO05D007251 2.1e-73 279.3 169 78.1
PSO339G4470 Papaver somniferum HOM05D003067 ORTHO05D007251 3.6e-73 278.5 170 78.8
Gohir.D06G096900 Gossypium hirsutum HOM05D003067 ORTHO05D007251 1.0e-72 276.9 163 82.2
PSO063G0174 Papaver somniferum HOM05D003067 ORTHO05D007251 3.0e-72 275.4 170 77.6
PSO063G5563 Papaver somniferum HOM05D003067 ORTHO05D007251 5.2e-72 274.6 170 77.6
Os04g0627200 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D007251 6.8e-72 274.2 169 78.7
TAR383G0409 Trochodendron aralioides HOM05D003067 ORTHO05D007251 1.2e-71 273.5 170 78.8
PSO384G1039 Papaver somniferum HOM05D003067 ORTHO05D007251 2.6e-71 272.3 170 77.1
MBI02_g23956_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D007251 1.7e-70 269.6 170 77.6
CDE04G0735 Ceratophyllum demersum HOM05D003067 ORTHO05D007251 2.2e-70 269.2 164 80.5
HPP92_015883 Vanilla planifolia HOM05D003067 ORTHO05D007251 2.8e-70 268.9 171 77.8
MD15G1155200 Malus domestica HOM05D003067 ORTHO05D007251 6.3e-70 267.7 173 76.9
Zm00001eb431360 Zea mays HOM05D003067 ORTHO05D007251 1.8e-69 266.2 170 77.1
BolC1t03287H Brassica oleracea HOM05D003067 ORTHO05D007251 2.0e-68 262.7 176 74.4
Zm00001eb069730 Zea mays HOM05D003067 ORTHO05D007251 1.2e-65 253.4 171 73.7
Zm00001eb069940 Zea mays HOM05D003067 ORTHO05D007251 1.2e-65 253.4 171 73.7
Zm00001eb069870 Zea mays HOM05D003067 ORTHO05D007251 3.6e-65 251.9 171 73.7
ATR0680G235 Amborella trichopoda HOM05D003067 ORTHO05D007251 6.1e-65 251.1 169 74.0
Zm00001eb069890 Zea mays HOM05D003067 ORTHO05D007251 2.3e-64 249.2 171 73.1
MBI02_g23954_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D007251 5.2e-64 248.1 170 73.5
MD00G1161600 Malus domestica HOM05D003067 ORTHO05D007251 1.8e-56 223.0 132 80.3
Oeu043498.1 Olea europaea HOM05D003067 ORTHO05D007251 7.8e-52 207.6 141 75.2
Pp3c16_5430 Physcomitrium patens HOM05D003067 ORTHO05D007251 9.2e-45 184.1 161 53.4
Nitab4.5_0001812g0050 Nicotiana tabacum HOM05D003067 ORTHO05D007251 1.7e-43 179.9 177 59.9
Mapoly0096s0064 Marchantia polymorpha HOM05D003067 ORTHO05D007251 2.5e-42 176.0 158 52.5
SEGI_15801 Sequoiadendron giganteum HOM05D003067 ORTHO05D007251 4.6e-36 155.2 130 56.9
Actinidia38340 Actinidia chinensis HOM05D003779 ORTHO05D007251 5.1e-35 151.8 113 69.9
Zm00001eb069810 Zea mays HOM05D003067 ORTHO05D007251 1.2e-33 147.1 99 76.8
Nitab4.5_0007909g0030 Nicotiana tabacum HOM05D003067 ORTHO05D007251 4.1e-29 132.1 76 84.2
arahy.Tifrunner.gnm1.ann1.8U5735 Arachis hypogaea HOM05D003067 ORTHO05D007251 9.2e-29 131.0 75 81.3
arahy.Tifrunner.gnm1.ann1.X1G7ME Arachis hypogaea HOM05D003067 ORTHO05D007251 1.0e-27 127.5 75 82.7
CBR_g47104 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-27 127.5 130 52.3
Zm00001eb070010 Zea mays HOM05D003067 ORTHO05D007251 1.0e-27 127.5 90 70.0
Peaxi162Scf00108g00811 Petunia axillaris HOM05D003067 ORTHO05D007251 3.3e-26 122.5 132 51.5
Lj3g0009875 Lotus japonicus HOM05D003067 ORTHO05D007251 1.2e-25 120.6 124 55.6
Nitab4.5_0007909g0020 Nicotiana tabacum HOM05D003067 ORTHO05D007251 1.1e-24 117.5 74 70.3
CDE05G0741 Ceratophyllum demersum HOM05D003067 ORTHO05D007251 7.1e-21 104.8 73 64.4
Medtr1567s0010 Medicago truncatula HOM05D000068 ORTHO05D011688 4.8e-09 65.5 148 33.8
SEGI_33800 Sequoiadendron giganteum HOM05D003067 ORTHO05D007251 4.8e-09 65.5 47 53.2
Haze_27001 Corylus avellana HOM05D000068 ORTHO05D011688 3.1e-08 62.8 124 34.7
Ca_29375_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 4.0e-08 62.4 160 30.0
Ca_29203_v3 Cicer arietinum L. HOM05D000068 ORTHO05D022358 7.6e-07 58.2 165 29.7
Ca_29125_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 9.9e-07 57.8 160 28.1
Pp3s32_180 Physcomitrium patens HOM05D016182 ORTHO05D312539 2.9e-06 56.2 152 34.2
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 6.4e-06 55.1 151 31.8


User provided reference genes

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