Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.7e-91 339.3 174 100.0
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.1e-90 336.7 174 98.9
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 2.4e-90 335.5 174 98.3
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 7.9e-89 330.5 174 96.0
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 2.3e-88 328.9 174 95.4
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 4.5e-84 314.7 174 89.1
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.9e-83 312.0 174 88.5
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 3.8e-83 311.6 174 90.2
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 2.7e-81 305.4 174 86.2
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 8.7e-80 300.4 174 85.1
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 3.3e-79 298.5 175 84.6
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.3e-78 296.6 174 85.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 4.8e-78 294.7 175 84.0
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 4.8e-78 294.7 174 84.5
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.8e-77 292.7 174 83.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.4e-77 292.4 198 77.8
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 5.3e-77 291.2 174 82.8
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 82.2
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 82.8
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 9.0e-77 290.4 174 82.8
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.5e-76 289.7 174 82.2
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.5e-76 288.1 174 81.6
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.7e-75 286.2 174 81.0
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 6.5e-75 284.3 174 80.5
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.1e-74 283.5 174 79.9
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.1e-74 283.5 174 81.0
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 1.1e-74 283.5 174 80.5
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.3
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.3
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.9e-74 282.7 174 79.9
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 79.9
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 7.1e-74 280.8 194 76.3
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 1.2e-73 280.0 174 78.7
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 79.3
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 81.6
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 79.3
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 79.3
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 78.2
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 77.6
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.1e-71 273.5 174 79.3
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.5e-71 273.1 174 77.6
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 77.6
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 77.6
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 75.9
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 74.1
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.7
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 73.6
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 73.6
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 73.6
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 73.6
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 73.6
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 75.9
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 73.6
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 76.4
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 74.1
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.1
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 77.0
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 73.0
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 75.3
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 73.0
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 73.0
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 74.1
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.6
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 4.5e-68 261.5 173 72.8
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.0
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 75.9
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 74.1
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 7.6e-68 260.8 174 73.6
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 7.6e-68 260.8 174 75.3
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.2e-67 259.2 171 74.9
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 70.7
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 73.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 74.1
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 73.6
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 3.2e-66 255.4 174 73.0
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 71.3
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 73.0
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 73.0
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 73.0
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.6e-65 251.9 158 78.5
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 6.1e-65 251.1 164 72.6
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 70.7
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 2.3e-64 249.2 164 72.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.3e-64 249.2 171 71.3
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.7e-64 247.7 156 76.3
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 143 80.4
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 71.3
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 70.1
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 73.0
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 71.3
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 71.3
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 70.7
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 70.1
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 2.2e-62 242.7 146 82.2
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 8.2e-62 240.7 173 69.9
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 71.3
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.8e-61 239.6 171 69.0
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 69.5
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 68.4
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.9e-59 232.3 151 70.9
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 69.5
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 2.1e-57 226.1 175 66.3
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 69.0
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.7e-57 224.9 174 64.4
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 1.8e-56 223.0 147 76.9
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 64.4
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 3.3e-55 218.8 174 64.4
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 5.7e-55 218.0 174 65.5
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 9.7e-55 217.2 174 64.9
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 9.7e-55 217.2 122 84.4
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 3.7e-54 215.3 196 57.7
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.8e-53 213.0 176 65.3
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.0e-51 207.2 122 79.5
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 3.8e-51 205.3 171 61.4
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.0e-51 204.9 171 61.4
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 5.0e-51 204.9 122 77.0
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.1e-49 199.5 239 47.3
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 1.1e-47 193.7 171 57.9
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.5e-47 193.4 190 57.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 7.0e-45 184.5 175 55.4
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 7.2e-42 174.5 174 53.4
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 2.7e-41 172.6 176 53.4
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 5.2e-40 168.3 95 81.1
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 5.2e-40 168.3 173 55.5
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 9.7e-39 164.1 94 79.8
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.4e-37 159.5 173 46.2
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 3.1e-37 159.1 94 77.7
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 2.7e-36 156.0 93 75.3
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 1.7e-27 126.7 85 65.9
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.2e-25 120.6 96 53.1
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-24 117.5 127 53.5
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 4.0e-24 115.5 81 65.4
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 4.4e-23 112.1 75 64.0
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.2e-20 104.0 170 36.5
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 3.5e-20 102.4 85 62.4
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.6e-17 93.6 55 72.7
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.6e-17 93.6 175 32.0
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.0e-16 89.4 53 73.6
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 8.9e-16 87.8 48 79.2
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.4e-13 80.5 94 50.0
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 2.3e-11 73.2 175 32.0
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.0e-11 72.0 38 78.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 4.9e-06 55.5 162 30.9


User provided reference genes

Program Settings